Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3915 and HP15_3916 are separated by 166 nucleotides HP15_3916 and HP15_3917 are separated by 94 nucleotides HP15_3917 and HP15_3918 are separated by 123 nucleotides
HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583
_3915
HP15_3916: HP15_3916 - sodium-dependent transporter family protein, at 4,145,750 to 4,147,147
_3916
HP15_3917: HP15_3917 - conserved hypothetical protein, secreted, at 4,147,242 to 4,147,811
_3917
HP15_3918: HP15_3918 - trap-type mannitol/chloroaromatic compound transport system, large permease component, at 4,147,935 to 4,149,245
_3918
Position (kb)
4145
4146
4147
4148 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4145.011 kb on + strand, within HP15_3915 at 4145.162 kb on + strand, within HP15_3915 at 4145.281 kb on + strand, within HP15_3915 at 4145.313 kb on - strand, within HP15_3915 at 4145.360 kb on + strand, within HP15_3915 at 4145.365 kb on + strand, within HP15_3915 at 4145.754 kb on - strand at 4145.882 kb on - strand at 4146.128 kb on - strand, within HP15_3916 at 4146.224 kb on - strand, within HP15_3916 at 4146.304 kb on + strand, within HP15_3916 at 4146.440 kb on + strand, within HP15_3916 at 4146.472 kb on - strand, within HP15_3916 at 4146.507 kb on + strand, within HP15_3916 at 4146.589 kb on - strand, within HP15_3916 at 4146.644 kb on - strand, within HP15_3916 at 4146.701 kb on + strand, within HP15_3916 at 4146.711 kb on - strand, within HP15_3916 at 4146.827 kb on - strand, within HP15_3916 at 4146.827 kb on - strand, within HP15_3916 at 4146.827 kb on - strand, within HP15_3916 at 4146.936 kb on + strand, within HP15_3916 at 4146.944 kb on - strand, within HP15_3916 at 4147.033 kb on + strand at 4147.077 kb on + strand at 4147.223 kb on + strand at 4147.268 kb on + strand at 4147.354 kb on + strand, within HP15_3917 at 4147.359 kb on + strand, within HP15_3917 at 4147.367 kb on - strand, within HP15_3917 at 4147.378 kb on + strand, within HP15_3917 at 4147.425 kb on - strand, within HP15_3917 at 4147.435 kb on - strand, within HP15_3917 at 4147.538 kb on - strand, within HP15_3917 at 4147.554 kb on + strand, within HP15_3917 at 4147.554 kb on + strand, within HP15_3917 at 4147.562 kb on - strand, within HP15_3917 at 4147.562 kb on - strand, within HP15_3917 at 4147.580 kb on + strand, within HP15_3917 at 4147.680 kb on - strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.757 kb on + strand at 4147.792 kb on + strand at 4147.830 kb on + strand at 4147.838 kb on - strand at 4147.892 kb on + strand at 4148.085 kb on - strand, within HP15_3918 at 4148.085 kb on - strand, within HP15_3918
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 4,145,011 + HP15_3915 0.65 +0.4 4,145,162 + HP15_3915 0.74 +1.0 4,145,281 + HP15_3915 0.81 +1.7 4,145,313 - HP15_3915 0.83 +0.9 4,145,360 + HP15_3915 0.86 +1.8 4,145,365 + HP15_3915 0.86 +1.8 4,145,754 - +0.7 4,145,882 - +0.9 4,146,128 - HP15_3916 0.27 +3.9 4,146,224 - HP15_3916 0.34 +1.6 4,146,304 + HP15_3916 0.40 +0.9 4,146,440 + HP15_3916 0.49 +0.5 4,146,472 - HP15_3916 0.52 +1.5 4,146,507 + HP15_3916 0.54 -0.1 4,146,589 - HP15_3916 0.60 +2.8 4,146,644 - HP15_3916 0.64 +0.5 4,146,701 + HP15_3916 0.68 +2.8 4,146,711 - HP15_3916 0.69 +0.5 4,146,827 - HP15_3916 0.77 +0.9 4,146,827 - HP15_3916 0.77 +0.3 4,146,827 - HP15_3916 0.77 +2.3 4,146,936 + HP15_3916 0.85 +0.7 4,146,944 - HP15_3916 0.85 +1.0 4,147,033 + +3.3 4,147,077 + +1.2 4,147,223 + -0.7 4,147,268 + +0.7 4,147,354 + HP15_3917 0.20 -0.4 4,147,359 + HP15_3917 0.21 +0.7 4,147,367 - HP15_3917 0.22 +0.6 4,147,378 + HP15_3917 0.24 +0.2 4,147,425 - HP15_3917 0.32 +2.2 4,147,435 - HP15_3917 0.34 +0.1 4,147,538 - HP15_3917 0.52 +0.3 4,147,554 + HP15_3917 0.55 -0.5 4,147,554 + HP15_3917 0.55 -0.5 4,147,562 - HP15_3917 0.56 +1.3 4,147,562 - HP15_3917 0.56 -0.5 4,147,580 + HP15_3917 0.59 -0.2 4,147,680 - HP15_3917 0.77 +0.5 4,147,743 + HP15_3917 0.88 -1.0 4,147,743 + HP15_3917 0.88 -0.3 4,147,743 + HP15_3917 0.88 -0.1 4,147,743 + HP15_3917 0.88 +0.0 4,147,757 + +0.8 4,147,792 + +1.4 4,147,830 + -0.0 4,147,838 - +0.1 4,147,892 + -0.2 4,148,085 - HP15_3918 0.11 -0.5 4,148,085 - HP15_3918 0.11 -0.3
Or see this region's nucleotide sequence