Strain Fitness in Marinobacter adhaerens HP15 around HP15_3426

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3424 and HP15_3425 are separated by 27 nucleotidesHP15_3425 and HP15_3426 are separated by 60 nucleotidesHP15_3426 and HP15_3427 are separated by 96 nucleotidesHP15_3427 and HP15_3428 are separated by 4 nucleotides HP15_3424: HP15_3424 - membrane protein containing DUF340, prokaryotic membrane, at 3,600,810 to 3,601,718 _3424 HP15_3425: HP15_3425 - conserved hypothetical protein, at 3,601,746 to 3,602,066 _3425 HP15_3426: HP15_3426 - conserved hypothetical protein, at 3,602,127 to 3,602,447 _3426 HP15_3427: HP15_3427 - two-component response regulator, at 3,602,544 to 3,602,945 _3427 HP15_3428: HP15_3428 - response regulator receiver protein, at 3,602,950 to 3,604,098 _3428 Position (kb) 3602 3603Strain fitness (log2 ratio) -2 -1 0 1 2at 3601.156 kb on + strand, within HP15_3424at 3601.164 kb on - strand, within HP15_3424at 3601.186 kb on - strand, within HP15_3424at 3601.192 kb on + strand, within HP15_3424at 3601.394 kb on - strand, within HP15_3424at 3601.423 kb on - strand, within HP15_3424at 3601.432 kb on + strand, within HP15_3424at 3601.439 kb on - strand, within HP15_3424at 3601.439 kb on - strand, within HP15_3424at 3601.450 kb on + strand, within HP15_3424at 3601.508 kb on - strand, within HP15_3424at 3601.585 kb on - strand, within HP15_3424at 3601.606 kb on - strand, within HP15_3424at 3601.632 kb on - strandat 3601.632 kb on - strandat 3601.756 kb on + strandat 3601.757 kb on - strandat 3601.764 kb on - strandat 3601.850 kb on - strand, within HP15_3425at 3601.859 kb on - strand, within HP15_3425at 3601.929 kb on + strand, within HP15_3425at 3601.937 kb on - strand, within HP15_3425at 3601.937 kb on - strand, within HP15_3425at 3601.951 kb on + strand, within HP15_3425at 3601.974 kb on + strand, within HP15_3425at 3601.974 kb on + strand, within HP15_3425at 3601.982 kb on - strand, within HP15_3425at 3601.982 kb on - strand, within HP15_3425at 3601.982 kb on - strand, within HP15_3425at 3601.984 kb on + strand, within HP15_3425at 3601.992 kb on - strand, within HP15_3425at 3602.084 kb on + strandat 3602.092 kb on - strandat 3602.124 kb on - strandat 3602.130 kb on + strandat 3602.130 kb on + strandat 3602.146 kb on + strandat 3602.146 kb on + strandat 3602.149 kb on - strandat 3602.149 kb on - strandat 3602.149 kb on - strandat 3602.154 kb on - strandat 3602.159 kb on - strand, within HP15_3426at 3602.193 kb on - strand, within HP15_3426at 3602.209 kb on + strand, within HP15_3426at 3602.217 kb on - strand, within HP15_3426at 3602.265 kb on - strand, within HP15_3426at 3602.332 kb on - strand, within HP15_3426at 3602.352 kb on - strand, within HP15_3426at 3602.372 kb on + strand, within HP15_3426at 3602.481 kb on + strandat 3602.517 kb on + strandat 3602.722 kb on + strand, within HP15_3427at 3602.730 kb on - strand, within HP15_3427at 3602.761 kb on - strand, within HP15_3427at 3602.826 kb on + strand, within HP15_3427at 3602.852 kb on + strand, within HP15_3427at 3602.893 kb on - strand, within HP15_3427at 3602.928 kb on + strandat 3603.009 kb on + strandat 3603.018 kb on + strandat 3603.027 kb on - strandat 3603.037 kb on + strandat 3603.157 kb on + strand, within HP15_3428at 3603.158 kb on + strand, within HP15_3428at 3603.165 kb on + strand, within HP15_3428at 3603.166 kb on - strand, within HP15_3428at 3603.171 kb on - strand, within HP15_3428at 3603.202 kb on + strand, within HP15_3428at 3603.208 kb on - strand, within HP15_3428at 3603.363 kb on + strand, within HP15_3428at 3603.367 kb on - strand, within HP15_3428at 3603.375 kb on + strand, within HP15_3428at 3603.419 kb on + strand, within HP15_3428at 3603.444 kb on - strand, within HP15_3428at 3603.447 kb on + strand, within HP15_3428

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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3,601,156 + HP15_3424 0.38 -0.4
3,601,164 - HP15_3424 0.39 -1.1
3,601,186 - HP15_3424 0.41 -0.8
3,601,192 + HP15_3424 0.42 +0.2
3,601,394 - HP15_3424 0.64 -0.8
3,601,423 - HP15_3424 0.67 +1.3
3,601,432 + HP15_3424 0.68 +1.4
3,601,439 - HP15_3424 0.69 -0.2
3,601,439 - HP15_3424 0.69 +0.5
3,601,450 + HP15_3424 0.70 +0.2
3,601,508 - HP15_3424 0.77 +1.2
3,601,585 - HP15_3424 0.85 +1.1
3,601,606 - HP15_3424 0.88 -0.2
3,601,632 - +1.1
3,601,632 - -0.4
3,601,756 + -0.0
3,601,757 - +1.4
3,601,764 - -0.9
3,601,850 - HP15_3425 0.32 +0.2
3,601,859 - HP15_3425 0.35 -0.0
3,601,929 + HP15_3425 0.57 +1.0
3,601,937 - HP15_3425 0.60 +1.0
3,601,937 - HP15_3425 0.60 +1.0
3,601,951 + HP15_3425 0.64 +0.7
3,601,974 + HP15_3425 0.71 +1.0
3,601,974 + HP15_3425 0.71 +1.1
3,601,982 - HP15_3425 0.74 -0.1
3,601,982 - HP15_3425 0.74 -0.3
3,601,982 - HP15_3425 0.74 -0.2
3,601,984 + HP15_3425 0.74 +0.1
3,601,992 - HP15_3425 0.77 +1.3
3,602,084 + -0.3
3,602,092 - +1.0
3,602,124 - +1.2
3,602,130 + -1.2
3,602,130 + -0.7
3,602,146 + +0.4
3,602,146 + -0.5
3,602,149 - +0.8
3,602,149 - -0.2
3,602,149 - -0.0
3,602,154 - +0.0
3,602,159 - HP15_3426 0.10 -0.1
3,602,193 - HP15_3426 0.21 +0.5
3,602,209 + HP15_3426 0.26 +1.4
3,602,217 - HP15_3426 0.28 -0.0
3,602,265 - HP15_3426 0.43 -0.0
3,602,332 - HP15_3426 0.64 -0.5
3,602,352 - HP15_3426 0.70 +1.5
3,602,372 + HP15_3426 0.76 +1.4
3,602,481 + +0.8
3,602,517 + +0.0
3,602,722 + HP15_3427 0.44 +2.0
3,602,730 - HP15_3427 0.46 -1.5
3,602,761 - HP15_3427 0.54 -0.5
3,602,826 + HP15_3427 0.70 +1.2
3,602,852 + HP15_3427 0.77 -1.8
3,602,893 - HP15_3427 0.87 +0.6
3,602,928 + -0.1
3,603,009 + -0.2
3,603,018 + +0.4
3,603,027 - -0.5
3,603,037 + -0.3
3,603,157 + HP15_3428 0.18 +0.1
3,603,158 + HP15_3428 0.18 -0.5
3,603,165 + HP15_3428 0.19 +0.6
3,603,166 - HP15_3428 0.19 +0.8
3,603,171 - HP15_3428 0.19 +0.2
3,603,202 + HP15_3428 0.22 +0.1
3,603,208 - HP15_3428 0.22 +0.8
3,603,363 + HP15_3428 0.36 +0.1
3,603,367 - HP15_3428 0.36 +0.5
3,603,375 + HP15_3428 0.37 -0.3
3,603,419 + HP15_3428 0.41 -0.4
3,603,444 - HP15_3428 0.43 +0.1
3,603,447 + HP15_3428 0.43 +0.0

Or see this region's nucleotide sequence