Strain Fitness in Marinobacter adhaerens HP15 around HP15_3058

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3057 and HP15_3058 are separated by 6 nucleotidesHP15_3058 and HP15_3059 are separated by 9 nucleotidesHP15_3059 and HP15_3060 are separated by 238 nucleotides HP15_3057: HP15_3057 - leucine/isoleucine/valine transporter permease subunit, at 3,207,965 to 3,209,236 _3057 HP15_3058: HP15_3058 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,209,243 to 3,209,998 _3058 HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709 _3059 HP15_3060: HP15_3060 - conserved hypothetical protein, secreted, at 3,210,948 to 3,211,412 _3060 Position (kb) 3209 3210Strain fitness (log2 ratio) -1 0 1 2 3 4at 3208.279 kb on + strand, within HP15_3057at 3208.287 kb on - strand, within HP15_3057at 3208.355 kb on + strand, within HP15_3057at 3208.358 kb on - strand, within HP15_3057at 3208.358 kb on - strand, within HP15_3057at 3208.367 kb on + strand, within HP15_3057at 3208.393 kb on - strand, within HP15_3057at 3208.416 kb on - strand, within HP15_3057at 3208.431 kb on + strand, within HP15_3057at 3208.439 kb on - strand, within HP15_3057at 3208.458 kb on - strand, within HP15_3057at 3208.478 kb on - strand, within HP15_3057at 3208.488 kb on - strand, within HP15_3057at 3208.520 kb on - strand, within HP15_3057at 3208.598 kb on + strand, within HP15_3057at 3208.656 kb on + strand, within HP15_3057at 3208.656 kb on + strand, within HP15_3057at 3208.840 kb on - strand, within HP15_3057at 3208.843 kb on + strand, within HP15_3057at 3208.843 kb on + strand, within HP15_3057at 3208.889 kb on + strand, within HP15_3057at 3208.961 kb on + strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3209.016 kb on - strand, within HP15_3057at 3209.148 kb on - strandat 3209.178 kb on - strandat 3209.178 kb on - strandat 3209.484 kb on + strand, within HP15_3058at 3209.631 kb on - strand, within HP15_3058at 3209.649 kb on + strand, within HP15_3058at 3209.649 kb on + strand, within HP15_3058at 3209.719 kb on - strand, within HP15_3058at 3209.868 kb on + strand, within HP15_3058at 3209.868 kb on + strand, within HP15_3058at 3209.992 kb on + strandat 3210.000 kb on - strandat 3210.007 kb on - strandat 3210.025 kb on + strandat 3210.053 kb on + strandat 3210.136 kb on + strand, within HP15_3059at 3210.218 kb on + strand, within HP15_3059at 3210.266 kb on - strand, within HP15_3059at 3210.380 kb on - strand, within HP15_3059at 3210.459 kb on + strand, within HP15_3059at 3210.820 kb on - strandat 3210.824 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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3,208,279 + HP15_3057 0.25 +2.5
3,208,287 - HP15_3057 0.25 +2.9
3,208,355 + HP15_3057 0.31 +2.9
3,208,358 - HP15_3057 0.31 +2.5
3,208,358 - HP15_3057 0.31 +0.6
3,208,367 + HP15_3057 0.32 +1.1
3,208,393 - HP15_3057 0.34 +1.2
3,208,416 - HP15_3057 0.35 +0.6
3,208,431 + HP15_3057 0.37 +1.1
3,208,439 - HP15_3057 0.37 +0.4
3,208,458 - HP15_3057 0.39 +1.1
3,208,478 - HP15_3057 0.40 +1.1
3,208,488 - HP15_3057 0.41 -0.3
3,208,520 - HP15_3057 0.44 +2.6
3,208,598 + HP15_3057 0.50 +3.8
3,208,656 + HP15_3057 0.54 +2.6
3,208,656 + HP15_3057 0.54 -0.0
3,208,840 - HP15_3057 0.69 +3.3
3,208,843 + HP15_3057 0.69 +1.6
3,208,843 + HP15_3057 0.69 +2.8
3,208,889 + HP15_3057 0.73 +1.2
3,208,961 + HP15_3057 0.78 +0.7
3,208,976 - HP15_3057 0.79 +0.5
3,208,976 - HP15_3057 0.79 +0.9
3,208,976 - HP15_3057 0.79 +0.7
3,208,976 - HP15_3057 0.79 +0.7
3,209,016 - HP15_3057 0.83 +1.3
3,209,148 - +0.4
3,209,178 - -1.4
3,209,178 - +0.9
3,209,484 + HP15_3058 0.32 +3.3
3,209,631 - HP15_3058 0.51 +0.7
3,209,649 + HP15_3058 0.54 +0.9
3,209,649 + HP15_3058 0.54 +1.6
3,209,719 - HP15_3058 0.63 +2.4
3,209,868 + HP15_3058 0.83 +2.7
3,209,868 + HP15_3058 0.83 +0.9
3,209,992 + +0.3
3,210,000 - +0.5
3,210,007 - +0.8
3,210,025 + +0.4
3,210,053 + +2.8
3,210,136 + HP15_3059 0.18 +0.7
3,210,218 + HP15_3059 0.30 +1.4
3,210,266 - HP15_3059 0.37 +2.6
3,210,380 - HP15_3059 0.53 -0.7
3,210,459 + HP15_3059 0.64 +0.6
3,210,820 - -0.3
3,210,824 + +0.8

Or see this region's nucleotide sequence