Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3056 and HP15_3057 overlap by 1 nucleotides HP15_3057 and HP15_3058 are separated by 6 nucleotides HP15_3058 and HP15_3059 are separated by 9 nucleotides
HP15_3056: HP15_3056 - high-affinity branched-chain amino acid ABC transporter, permease protein, at 3,207,042 to 3,207,965
_3056
HP15_3057: HP15_3057 - leucine/isoleucine/valine transporter permease subunit, at 3,207,965 to 3,209,236
_3057
HP15_3058: HP15_3058 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,209,243 to 3,209,998
_3058
HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709
_3059
Position (kb)
3207
3208
3209
3210 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3207.021 kb on + strand at 3207.050 kb on - strand at 3207.100 kb on + strand at 3207.277 kb on - strand, within HP15_3056 at 3207.317 kb on - strand, within HP15_3056 at 3207.370 kb on - strand, within HP15_3056 at 3207.492 kb on + strand, within HP15_3056 at 3207.507 kb on - strand, within HP15_3056 at 3207.557 kb on + strand, within HP15_3056 at 3207.709 kb on - strand, within HP15_3056 at 3207.716 kb on - strand, within HP15_3056 at 3207.772 kb on + strand, within HP15_3056 at 3207.868 kb on - strand, within HP15_3056 at 3207.868 kb on - strand, within HP15_3056 at 3207.887 kb on - strand at 3208.015 kb on + strand at 3208.015 kb on + strand at 3208.015 kb on + strand at 3208.057 kb on + strand at 3208.065 kb on + strand at 3208.083 kb on - strand at 3208.156 kb on + strand, within HP15_3057 at 3208.164 kb on - strand, within HP15_3057 at 3208.166 kb on + strand, within HP15_3057 at 3208.279 kb on + strand, within HP15_3057 at 3208.287 kb on - strand, within HP15_3057 at 3208.355 kb on + strand, within HP15_3057 at 3208.358 kb on - strand, within HP15_3057 at 3208.358 kb on - strand, within HP15_3057 at 3208.367 kb on + strand, within HP15_3057 at 3208.393 kb on - strand, within HP15_3057 at 3208.416 kb on - strand, within HP15_3057 at 3208.431 kb on + strand, within HP15_3057 at 3208.439 kb on - strand, within HP15_3057 at 3208.458 kb on - strand, within HP15_3057 at 3208.478 kb on - strand, within HP15_3057 at 3208.488 kb on - strand, within HP15_3057 at 3208.520 kb on - strand, within HP15_3057 at 3208.598 kb on + strand, within HP15_3057 at 3208.656 kb on + strand, within HP15_3057 at 3208.656 kb on + strand, within HP15_3057 at 3208.840 kb on - strand, within HP15_3057 at 3208.843 kb on + strand, within HP15_3057 at 3208.843 kb on + strand, within HP15_3057 at 3208.889 kb on + strand, within HP15_3057 at 3208.961 kb on + strand, within HP15_3057 at 3208.976 kb on - strand, within HP15_3057 at 3208.976 kb on - strand, within HP15_3057 at 3208.976 kb on - strand, within HP15_3057 at 3208.976 kb on - strand, within HP15_3057 at 3209.016 kb on - strand, within HP15_3057 at 3209.148 kb on - strand at 3209.178 kb on - strand at 3209.178 kb on - strand at 3209.484 kb on + strand, within HP15_3058 at 3209.631 kb on - strand, within HP15_3058 at 3209.649 kb on + strand, within HP15_3058 at 3209.649 kb on + strand, within HP15_3058 at 3209.719 kb on - strand, within HP15_3058 at 3209.868 kb on + strand, within HP15_3058 at 3209.868 kb on + strand, within HP15_3058 at 3209.992 kb on + strand at 3210.000 kb on - strand at 3210.007 kb on - strand at 3210.025 kb on + strand at 3210.053 kb on + strand at 3210.136 kb on + strand, within HP15_3059 at 3210.218 kb on + strand, within HP15_3059
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 3,207,021 + +0.6 3,207,050 - +2.8 3,207,100 + +0.9 3,207,277 - HP15_3056 0.25 +1.1 3,207,317 - HP15_3056 0.30 +2.3 3,207,370 - HP15_3056 0.35 +1.0 3,207,492 + HP15_3056 0.49 +2.5 3,207,507 - HP15_3056 0.50 +3.0 3,207,557 + HP15_3056 0.56 +0.9 3,207,709 - HP15_3056 0.72 +0.3 3,207,716 - HP15_3056 0.73 +2.6 3,207,772 + HP15_3056 0.79 +0.8 3,207,868 - HP15_3056 0.89 +1.2 3,207,868 - HP15_3056 0.89 +2.9 3,207,887 - +0.7 3,208,015 + +2.8 3,208,015 + +1.3 3,208,015 + +1.0 3,208,057 + +1.1 3,208,065 + +1.3 3,208,083 - +0.3 3,208,156 + HP15_3057 0.15 +0.7 3,208,164 - HP15_3057 0.16 +1.0 3,208,166 + HP15_3057 0.16 +2.4 3,208,279 + HP15_3057 0.25 +2.5 3,208,287 - HP15_3057 0.25 +2.9 3,208,355 + HP15_3057 0.31 +2.9 3,208,358 - HP15_3057 0.31 +2.5 3,208,358 - HP15_3057 0.31 +0.6 3,208,367 + HP15_3057 0.32 +1.1 3,208,393 - HP15_3057 0.34 +1.2 3,208,416 - HP15_3057 0.35 +0.6 3,208,431 + HP15_3057 0.37 +1.1 3,208,439 - HP15_3057 0.37 +0.4 3,208,458 - HP15_3057 0.39 +1.1 3,208,478 - HP15_3057 0.40 +1.1 3,208,488 - HP15_3057 0.41 -0.3 3,208,520 - HP15_3057 0.44 +2.6 3,208,598 + HP15_3057 0.50 +3.8 3,208,656 + HP15_3057 0.54 +2.6 3,208,656 + HP15_3057 0.54 -0.0 3,208,840 - HP15_3057 0.69 +3.3 3,208,843 + HP15_3057 0.69 +1.6 3,208,843 + HP15_3057 0.69 +2.8 3,208,889 + HP15_3057 0.73 +1.2 3,208,961 + HP15_3057 0.78 +0.7 3,208,976 - HP15_3057 0.79 +0.5 3,208,976 - HP15_3057 0.79 +0.9 3,208,976 - HP15_3057 0.79 +0.7 3,208,976 - HP15_3057 0.79 +0.7 3,209,016 - HP15_3057 0.83 +1.3 3,209,148 - +0.4 3,209,178 - -1.4 3,209,178 - +0.9 3,209,484 + HP15_3058 0.32 +3.3 3,209,631 - HP15_3058 0.51 +0.7 3,209,649 + HP15_3058 0.54 +0.9 3,209,649 + HP15_3058 0.54 +1.6 3,209,719 - HP15_3058 0.63 +2.4 3,209,868 + HP15_3058 0.83 +2.7 3,209,868 + HP15_3058 0.83 +0.9 3,209,992 + +0.3 3,210,000 - +0.5 3,210,007 - +0.8 3,210,025 + +0.4 3,210,053 + +2.8 3,210,136 + HP15_3059 0.18 +0.7 3,210,218 + HP15_3059 0.30 +1.4
Or see this region's nucleotide sequence