Strain Fitness in Marinobacter adhaerens HP15 around HP15_3022

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3020 and HP15_3021 are separated by 12 nucleotidesHP15_3021 and HP15_3022 are separated by 128 nucleotidesHP15_3022 and HP15_3023 are separated by 2 nucleotides HP15_3020: HP15_3020 - lysine exporter protein (LYSE/YGGA), at 3,164,627 to 3,165,247 _3020 HP15_3021: HP15_3021 - glycolate oxidase iron-sulfur subunit, at 3,165,260 to 3,165,691 _3021 HP15_3022: HP15_3022 - protein of unknown function cysteine-rich region domain protein, at 3,165,820 to 3,167,028 _3022 HP15_3023: HP15_3023 - glycolate oxidase FAD binding subunit, at 3,167,031 to 3,168,098 _3023 Position (kb) 3165 3166 3167 3168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3165.000 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.059 kb on - strand, within HP15_3020at 3165.064 kb on + strand, within HP15_3020at 3165.251 kb on - strandat 3165.294 kb on - strandat 3165.398 kb on + strand, within HP15_3021at 3165.414 kb on + strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.438 kb on + strand, within HP15_3021at 3165.659 kb on - strandat 3165.697 kb on + strandat 3165.704 kb on + strandat 3165.712 kb on - strandat 3165.712 kb on - strandat 3165.834 kb on + strandat 3166.076 kb on - strand, within HP15_3022at 3166.146 kb on - strand, within HP15_3022at 3166.196 kb on - strand, within HP15_3022at 3166.408 kb on - strand, within HP15_3022at 3166.416 kb on + strand, within HP15_3022at 3166.432 kb on - strand, within HP15_3022at 3166.490 kb on + strand, within HP15_3022at 3166.490 kb on + strand, within HP15_3022at 3166.498 kb on - strand, within HP15_3022at 3166.597 kb on + strand, within HP15_3022at 3166.669 kb on + strand, within HP15_3022at 3166.785 kb on - strandat 3166.810 kb on + strand, within HP15_3022at 3166.839 kb on + strand, within HP15_3022at 3166.916 kb on - strandat 3167.075 kb on + strandat 3167.083 kb on - strandat 3167.109 kb on + strandat 3167.175 kb on - strand, within HP15_3023at 3167.180 kb on - strand, within HP15_3023at 3167.324 kb on - strand, within HP15_3023at 3167.412 kb on + strand, within HP15_3023at 3167.456 kb on - strand, within HP15_3023at 3167.456 kb on - strand, within HP15_3023at 3167.562 kb on - strand, within HP15_3023at 3167.562 kb on - strand, within HP15_3023at 3167.648 kb on - strand, within HP15_3023at 3167.657 kb on + strand, within HP15_3023at 3167.657 kb on + strand, within HP15_3023at 3167.716 kb on + strand, within HP15_3023at 3167.786 kb on + strand, within HP15_3023at 3167.806 kb on - strand, within HP15_3023at 3167.978 kb on - strand, within HP15_3023

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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3,165,000 - HP15_3020 0.60 -1.1
3,165,000 - HP15_3020 0.60 -0.1
3,165,059 - HP15_3020 0.70 +1.1
3,165,064 + HP15_3020 0.70 -0.4
3,165,251 - -0.4
3,165,294 - +0.2
3,165,398 + HP15_3021 0.32 +0.3
3,165,414 + HP15_3021 0.36 -1.0
3,165,422 - HP15_3021 0.38 -0.5
3,165,422 - HP15_3021 0.38 +1.1
3,165,438 + HP15_3021 0.41 +0.7
3,165,659 - -0.3
3,165,697 + +2.0
3,165,704 + +1.6
3,165,712 - -0.0
3,165,712 - -0.2
3,165,834 + -1.5
3,166,076 - HP15_3022 0.21 -0.7
3,166,146 - HP15_3022 0.27 -0.0
3,166,196 - HP15_3022 0.31 -1.8
3,166,408 - HP15_3022 0.49 -1.7
3,166,416 + HP15_3022 0.49 +0.4
3,166,432 - HP15_3022 0.51 -1.1
3,166,490 + HP15_3022 0.55 -2.2
3,166,490 + HP15_3022 0.55 -1.8
3,166,498 - HP15_3022 0.56 -2.1
3,166,597 + HP15_3022 0.64 -0.8
3,166,669 + HP15_3022 0.70 -1.8
3,166,785 - +0.2
3,166,810 + HP15_3022 0.82 -2.0
3,166,839 + HP15_3022 0.84 -0.8
3,166,916 - -2.4
3,167,075 + -0.7
3,167,083 - -1.7
3,167,109 + -1.2
3,167,175 - HP15_3023 0.13 -2.4
3,167,180 - HP15_3023 0.14 -1.2
3,167,324 - HP15_3023 0.27 -1.6
3,167,412 + HP15_3023 0.36 -0.2
3,167,456 - HP15_3023 0.40 -0.5
3,167,456 - HP15_3023 0.40 -2.8
3,167,562 - HP15_3023 0.50 -0.6
3,167,562 - HP15_3023 0.50 -0.4
3,167,648 - HP15_3023 0.58 -0.7
3,167,657 + HP15_3023 0.59 +0.6
3,167,657 + HP15_3023 0.59 -1.2
3,167,716 + HP15_3023 0.64 -0.3
3,167,786 + HP15_3023 0.71 -1.8
3,167,806 - HP15_3023 0.73 -1.8
3,167,978 - HP15_3023 0.89 -1.5

Or see this region's nucleotide sequence