Strain Fitness in Marinobacter adhaerens HP15 around HP15_3005

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3003 and HP15_3004 are separated by 144 nucleotidesHP15_3004 and HP15_3005 are separated by 144 nucleotidesHP15_3005 and HP15_3006 are separated by 20 nucleotides HP15_3003: HP15_3003 - protein-export protein SecB, at 3,148,073 to 3,148,576 _3003 HP15_3004: HP15_3004 - rhodanese domain protein, at 3,148,721 to 3,149,137 _3004 HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832 _3005 HP15_3006: HP15_3006 - peptidase M23B, at 3,150,853 to 3,151,986 _3006 Position (kb) 3149 3150 3151Strain fitness (log2 ratio) -1 0 1at 3148.289 kb on + strand, within HP15_3003at 3148.331 kb on + strand, within HP15_3003at 3148.388 kb on - strand, within HP15_3003at 3148.388 kb on - strand, within HP15_3003at 3148.395 kb on + strand, within HP15_3003at 3148.470 kb on + strand, within HP15_3003at 3148.487 kb on + strand, within HP15_3003at 3148.609 kb on + strandat 3148.628 kb on + strandat 3148.634 kb on - strandat 3148.641 kb on - strandat 3148.877 kb on - strand, within HP15_3004at 3148.910 kb on + strand, within HP15_3004at 3148.910 kb on + strand, within HP15_3004at 3149.139 kb on + strandat 3149.167 kb on + strandat 3149.167 kb on + strandat 3150.825 kb on - strandat 3150.853 kb on + strandat 3150.885 kb on + strandat 3150.908 kb on - strandat 3150.928 kb on - strandat 3150.956 kb on + strandat 3151.012 kb on - strand, within HP15_3006at 3151.113 kb on + strand, within HP15_3006at 3151.187 kb on - strand, within HP15_3006at 3151.268 kb on - strand, within HP15_3006at 3151.271 kb on + strand, within HP15_3006at 3151.304 kb on + strand, within HP15_3006at 3151.340 kb on + strand, within HP15_3006at 3151.380 kb on + strand, within HP15_3006at 3151.388 kb on - strand, within HP15_3006at 3151.390 kb on + strand, within HP15_3006at 3151.572 kb on - strand, within HP15_3006at 3151.617 kb on + strand, within HP15_3006at 3151.625 kb on - strand, within HP15_3006at 3151.646 kb on - strand, within HP15_3006at 3151.647 kb on - strand, within HP15_3006at 3151.729 kb on + strand, within HP15_3006at 3151.772 kb on + strand, within HP15_3006at 3151.780 kb on - strand, within HP15_3006at 3151.780 kb on - strand, within HP15_3006

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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3,148,289 + HP15_3003 0.43 -0.4
3,148,331 + HP15_3003 0.51 +0.8
3,148,388 - HP15_3003 0.62 -1.7
3,148,388 - HP15_3003 0.62 +0.8
3,148,395 + HP15_3003 0.64 +0.4
3,148,470 + HP15_3003 0.79 -0.5
3,148,487 + HP15_3003 0.82 +0.7
3,148,609 + -0.7
3,148,628 + -1.7
3,148,634 - +0.8
3,148,641 - -1.3
3,148,877 - HP15_3004 0.37 -0.0
3,148,910 + HP15_3004 0.45 -1.6
3,148,910 + HP15_3004 0.45 -0.5
3,149,139 + +0.1
3,149,167 + -0.3
3,149,167 + -0.6
3,150,825 - +0.0
3,150,853 + -0.3
3,150,885 + +0.9
3,150,908 - +1.0
3,150,928 - -0.4
3,150,956 + -0.5
3,151,012 - HP15_3006 0.14 +0.1
3,151,113 + HP15_3006 0.23 -0.3
3,151,187 - HP15_3006 0.29 -0.2
3,151,268 - HP15_3006 0.37 +0.0
3,151,271 + HP15_3006 0.37 +0.1
3,151,304 + HP15_3006 0.40 -0.1
3,151,340 + HP15_3006 0.43 +0.2
3,151,380 + HP15_3006 0.46 -0.8
3,151,388 - HP15_3006 0.47 +0.1
3,151,390 + HP15_3006 0.47 +1.3
3,151,572 - HP15_3006 0.63 +0.7
3,151,617 + HP15_3006 0.67 -0.6
3,151,625 - HP15_3006 0.68 -0.2
3,151,646 - HP15_3006 0.70 -0.2
3,151,647 - HP15_3006 0.70 +0.3
3,151,729 + HP15_3006 0.77 -0.3
3,151,772 + HP15_3006 0.81 -1.7
3,151,780 - HP15_3006 0.82 -1.1
3,151,780 - HP15_3006 0.82 -0.1

Or see this region's nucleotide sequence