Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2616 and HP15_2617 are separated by 72 nucleotides HP15_2617 and HP15_2618 are separated by 61 nucleotides HP15_2618 and HP15_2619 are separated by 207 nucleotides
HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227
_2616
HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890
_2617
HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152
_2618
HP15_2619: HP15_2619 - conserved hypothetical protein, secreted, at 2,770,360 to 2,771,129
_2619
Position (kb)
2769
2770 Strain fitness (log2 ratio)
-1
0
1
2 at 2768.327 kb on + strand, within HP15_2616 at 2768.327 kb on + strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.340 kb on - strand, within HP15_2616 at 2768.346 kb on - strand, within HP15_2616 at 2768.400 kb on - strand, within HP15_2616 at 2768.412 kb on - strand, within HP15_2616 at 2768.437 kb on + strand, within HP15_2616 at 2768.472 kb on - strand, within HP15_2616 at 2768.513 kb on - strand, within HP15_2616 at 2768.517 kb on - strand, within HP15_2616 at 2768.537 kb on + strand, within HP15_2616 at 2768.627 kb on + strand, within HP15_2616 at 2768.841 kb on - strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.927 kb on + strand, within HP15_2616 at 2768.947 kb on + strand, within HP15_2616 at 2769.042 kb on + strand, within HP15_2616 at 2769.092 kb on + strand, within HP15_2616 at 2769.154 kb on + strand at 2769.228 kb on + strand at 2769.351 kb on - strand at 2769.351 kb on - strand at 2769.387 kb on + strand, within HP15_2617 at 2769.405 kb on - strand, within HP15_2617 at 2769.649 kb on + strand, within HP15_2617 at 2769.707 kb on + strand, within HP15_2617 at 2769.795 kb on - strand, within HP15_2617 at 2770.086 kb on - strand, within HP15_2618 at 2770.088 kb on - strand, within HP15_2618 at 2770.280 kb on + strand at 2770.459 kb on + strand, within HP15_2619 at 2770.563 kb on - strand, within HP15_2619 at 2770.590 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.834 kb on - strand, within HP15_2619 at 2770.879 kb on - strand, within HP15_2619
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 2,768,327 + HP15_2616 0.27 -0.4 2,768,327 + HP15_2616 0.27 +0.2 2,768,335 - HP15_2616 0.27 +1.2 2,768,335 - HP15_2616 0.27 +1.3 2,768,335 - HP15_2616 0.27 -0.1 2,768,340 - HP15_2616 0.28 -1.1 2,768,346 - HP15_2616 0.28 -0.2 2,768,400 - HP15_2616 0.33 +0.9 2,768,412 - HP15_2616 0.33 +0.8 2,768,437 + HP15_2616 0.36 +0.1 2,768,472 - HP15_2616 0.38 -0.6 2,768,513 - HP15_2616 0.42 -0.0 2,768,517 - HP15_2616 0.42 -0.7 2,768,537 + HP15_2616 0.44 -0.4 2,768,627 + HP15_2616 0.51 -0.8 2,768,841 - HP15_2616 0.68 +0.2 2,768,856 + HP15_2616 0.70 -0.2 2,768,856 + HP15_2616 0.70 +0.7 2,768,856 + HP15_2616 0.70 -0.3 2,768,927 + HP15_2616 0.75 -0.7 2,768,947 + HP15_2616 0.77 +0.9 2,769,042 + HP15_2616 0.85 -0.6 2,769,092 + HP15_2616 0.89 +0.2 2,769,154 + +1.4 2,769,228 + +2.0 2,769,351 - +1.1 2,769,351 - -0.7 2,769,387 + HP15_2617 0.15 +1.8 2,769,405 - HP15_2617 0.18 +0.8 2,769,649 + HP15_2617 0.59 +1.7 2,769,707 + HP15_2617 0.69 -0.2 2,769,795 - HP15_2617 0.84 -0.5 2,770,086 - HP15_2618 0.67 -0.3 2,770,088 - HP15_2618 0.68 -1.1 2,770,280 + +0.5 2,770,459 + HP15_2619 0.13 -1.1 2,770,563 - HP15_2619 0.26 -1.4 2,770,590 - HP15_2619 0.30 +2.7 2,770,710 - HP15_2619 0.45 -0.6 2,770,710 - HP15_2619 0.45 -0.5 2,770,710 - HP15_2619 0.45 +0.8 2,770,834 - HP15_2619 0.62 -0.0 2,770,879 - HP15_2619 0.67 -0.7
Or see this region's nucleotide sequence