Strain Fitness in Marinobacter adhaerens HP15 around HP15_1559

Experiment: L-Glutamine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1557 and HP15_1558 are separated by 85 nucleotidesHP15_1558 and HP15_1559 overlap by 4 nucleotidesHP15_1559 and HP15_1560 are separated by 151 nucleotides HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403 _1557 HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262 _1558 HP15_1559: HP15_1559 - auxin efflux carrier, at 1,639,259 to 1,640,206 _1559 HP15_1560: HP15_1560 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein, at 1,640,358 to 1,642,691 _1560 Position (kb) 1639 1640 1641Strain fitness (log2 ratio) -1 0 1at 1638.319 kb on - strand, within HP15_1557at 1638.586 kb on + strand, within HP15_1558at 1638.619 kb on + strand, within HP15_1558at 1638.708 kb on - strand, within HP15_1558at 1638.896 kb on - strand, within HP15_1558at 1638.899 kb on + strand, within HP15_1558at 1638.930 kb on - strand, within HP15_1558at 1639.023 kb on + strand, within HP15_1558at 1639.025 kb on + strand, within HP15_1558at 1639.149 kb on - strand, within HP15_1558at 1639.177 kb on + strand, within HP15_1558at 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.257 kb on + strandat 1639.265 kb on - strandat 1639.267 kb on + strandat 1639.291 kb on + strandat 1639.424 kb on - strand, within HP15_1559at 1639.545 kb on + strand, within HP15_1559at 1639.591 kb on + strand, within HP15_1559at 1639.619 kb on + strand, within HP15_1559at 1639.627 kb on - strand, within HP15_1559at 1640.072 kb on - strand, within HP15_1559at 1640.072 kb on - strand, within HP15_1559at 1640.136 kb on - strandat 1640.212 kb on - strandat 1640.212 kb on - strandat 1640.254 kb on - strandat 1640.297 kb on + strandat 1640.304 kb on - strandat 1640.345 kb on + strandat 1640.481 kb on - strandat 1640.570 kb on + strandat 1640.670 kb on - strand, within HP15_1560at 1640.762 kb on + strand, within HP15_1560at 1640.763 kb on - strand, within HP15_1560at 1640.795 kb on - strand, within HP15_1560at 1641.015 kb on + strand, within HP15_1560at 1641.015 kb on + strand, within HP15_1560at 1641.015 kb on + strand, within HP15_1560at 1641.023 kb on - strand, within HP15_1560at 1641.042 kb on + strand, within HP15_1560at 1641.042 kb on + strand, within HP15_1560at 1641.050 kb on - strand, within HP15_1560at 1641.124 kb on + strand, within HP15_1560at 1641.125 kb on + strand, within HP15_1560at 1641.159 kb on + strand, within HP15_1560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
remove
1,638,319 - HP15_1557 0.69 +1.0
1,638,586 + HP15_1558 0.13 +0.8
1,638,619 + HP15_1558 0.17 -0.5
1,638,708 - HP15_1558 0.28 -0.1
1,638,896 - HP15_1558 0.53 +1.5
1,638,899 + HP15_1558 0.53 +1.1
1,638,930 - HP15_1558 0.57 +0.8
1,639,023 + HP15_1558 0.69 -0.9
1,639,025 + HP15_1558 0.69 -0.4
1,639,149 - HP15_1558 0.85 +1.3
1,639,177 + HP15_1558 0.89 -0.5
1,639,257 + +1.0
1,639,257 + +0.7
1,639,257 + +0.2
1,639,257 + -0.2
1,639,257 + +0.0
1,639,265 - +0.5
1,639,267 + -0.4
1,639,291 + +0.6
1,639,424 - HP15_1559 0.17 +0.3
1,639,545 + HP15_1559 0.30 -1.0
1,639,591 + HP15_1559 0.35 +0.6
1,639,619 + HP15_1559 0.38 -1.1
1,639,627 - HP15_1559 0.39 -0.2
1,640,072 - HP15_1559 0.86 -0.2
1,640,072 - HP15_1559 0.86 -1.1
1,640,136 - +0.1
1,640,212 - +1.5
1,640,212 - -0.3
1,640,254 - +0.5
1,640,297 + -0.3
1,640,304 - -0.2
1,640,345 + -0.1
1,640,481 - +1.0
1,640,570 + -0.4
1,640,670 - HP15_1560 0.13 -0.6
1,640,762 + HP15_1560 0.17 +0.6
1,640,763 - HP15_1560 0.17 -0.1
1,640,795 - HP15_1560 0.19 +0.5
1,641,015 + HP15_1560 0.28 +0.6
1,641,015 + HP15_1560 0.28 +0.6
1,641,015 + HP15_1560 0.28 -0.4
1,641,023 - HP15_1560 0.28 +1.3
1,641,042 + HP15_1560 0.29 -0.5
1,641,042 + HP15_1560 0.29 +0.1
1,641,050 - HP15_1560 0.30 +0.3
1,641,124 + HP15_1560 0.33 -0.1
1,641,125 + HP15_1560 0.33 -0.0
1,641,159 + HP15_1560 0.34 +0.1

Or see this region's nucleotide sequence