Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1557 and HP15_1558 are separated by 85 nucleotides HP15_1558 and HP15_1559 overlap by 4 nucleotides HP15_1559 and HP15_1560 are separated by 151 nucleotides
HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403
_1557
HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262
_1558
HP15_1559: HP15_1559 - auxin efflux carrier, at 1,639,259 to 1,640,206
_1559
HP15_1560: HP15_1560 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein, at 1,640,358 to 1,642,691
_1560
Position (kb)
1639
1640
1641 Strain fitness (log2 ratio)
-1
0
1 at 1638.319 kb on - strand, within HP15_1557 at 1638.586 kb on + strand, within HP15_1558 at 1638.619 kb on + strand, within HP15_1558 at 1638.708 kb on - strand, within HP15_1558 at 1638.896 kb on - strand, within HP15_1558 at 1638.899 kb on + strand, within HP15_1558 at 1638.930 kb on - strand, within HP15_1558 at 1639.023 kb on + strand, within HP15_1558 at 1639.025 kb on + strand, within HP15_1558 at 1639.149 kb on - strand, within HP15_1558 at 1639.177 kb on + strand, within HP15_1558 at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.265 kb on - strand at 1639.267 kb on + strand at 1639.291 kb on + strand at 1639.424 kb on - strand, within HP15_1559 at 1639.545 kb on + strand, within HP15_1559 at 1639.591 kb on + strand, within HP15_1559 at 1639.619 kb on + strand, within HP15_1559 at 1639.627 kb on - strand, within HP15_1559 at 1640.072 kb on - strand, within HP15_1559 at 1640.072 kb on - strand, within HP15_1559 at 1640.136 kb on - strand at 1640.212 kb on - strand at 1640.212 kb on - strand at 1640.254 kb on - strand at 1640.297 kb on + strand at 1640.304 kb on - strand at 1640.345 kb on + strand at 1640.481 kb on - strand at 1640.570 kb on + strand at 1640.670 kb on - strand, within HP15_1560 at 1640.762 kb on + strand, within HP15_1560 at 1640.763 kb on - strand, within HP15_1560 at 1640.795 kb on - strand, within HP15_1560 at 1641.015 kb on + strand, within HP15_1560 at 1641.015 kb on + strand, within HP15_1560 at 1641.015 kb on + strand, within HP15_1560 at 1641.023 kb on - strand, within HP15_1560 at 1641.042 kb on + strand, within HP15_1560 at 1641.042 kb on + strand, within HP15_1560 at 1641.050 kb on - strand, within HP15_1560 at 1641.124 kb on + strand, within HP15_1560 at 1641.125 kb on + strand, within HP15_1560 at 1641.159 kb on + strand, within HP15_1560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 1,638,319 - HP15_1557 0.69 +1.0 1,638,586 + HP15_1558 0.13 +0.8 1,638,619 + HP15_1558 0.17 -0.5 1,638,708 - HP15_1558 0.28 -0.1 1,638,896 - HP15_1558 0.53 +1.5 1,638,899 + HP15_1558 0.53 +1.1 1,638,930 - HP15_1558 0.57 +0.8 1,639,023 + HP15_1558 0.69 -0.9 1,639,025 + HP15_1558 0.69 -0.4 1,639,149 - HP15_1558 0.85 +1.3 1,639,177 + HP15_1558 0.89 -0.5 1,639,257 + +1.0 1,639,257 + +0.7 1,639,257 + +0.2 1,639,257 + -0.2 1,639,257 + +0.0 1,639,265 - +0.5 1,639,267 + -0.4 1,639,291 + +0.6 1,639,424 - HP15_1559 0.17 +0.3 1,639,545 + HP15_1559 0.30 -1.0 1,639,591 + HP15_1559 0.35 +0.6 1,639,619 + HP15_1559 0.38 -1.1 1,639,627 - HP15_1559 0.39 -0.2 1,640,072 - HP15_1559 0.86 -0.2 1,640,072 - HP15_1559 0.86 -1.1 1,640,136 - +0.1 1,640,212 - +1.5 1,640,212 - -0.3 1,640,254 - +0.5 1,640,297 + -0.3 1,640,304 - -0.2 1,640,345 + -0.1 1,640,481 - +1.0 1,640,570 + -0.4 1,640,670 - HP15_1560 0.13 -0.6 1,640,762 + HP15_1560 0.17 +0.6 1,640,763 - HP15_1560 0.17 -0.1 1,640,795 - HP15_1560 0.19 +0.5 1,641,015 + HP15_1560 0.28 +0.6 1,641,015 + HP15_1560 0.28 +0.6 1,641,015 + HP15_1560 0.28 -0.4 1,641,023 - HP15_1560 0.28 +1.3 1,641,042 + HP15_1560 0.29 -0.5 1,641,042 + HP15_1560 0.29 +0.1 1,641,050 - HP15_1560 0.30 +0.3 1,641,124 + HP15_1560 0.33 -0.1 1,641,125 + HP15_1560 0.33 -0.0 1,641,159 + HP15_1560 0.34 +0.1
Or see this region's nucleotide sequence