Strain Fitness in Dechlorosoma suillum PS around Dsui_3326

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3325 and Dsui_3326 are separated by 23 nucleotidesDsui_3326 and Dsui_3327 are separated by 123 nucleotidesDsui_3327 and Dsui_3328 are separated by 102 nucleotides Dsui_3325: Dsui_3325 - protein-export membrane protein, SecD/SecF family, at 3,564,569 to 3,566,437 _3325 Dsui_3326: Dsui_3326 - protein-export membrane protein, SecD/SecF family, at 3,566,461 to 3,567,408 _3326 Dsui_3327: Dsui_3327 - cytochrome b, at 3,567,532 to 3,568,248 _3327 Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821 _3328 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -1 0 1at 3566.399 kb on + strandat 3566.417 kb on + strandat 3566.417 kb on + strandat 3567.445 kb on + strandat 3567.596 kb on + strandat 3567.659 kb on + strand, within Dsui_3327at 3567.741 kb on + strand, within Dsui_3327at 3567.860 kb on - strand, within Dsui_3327at 3567.962 kb on - strand, within Dsui_3327at 3568.049 kb on + strand, within Dsui_3327at 3568.117 kb on - strandat 3568.252 kb on - strandat 3568.305 kb on + strandat 3568.349 kb on + strandat 3568.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,566,399 + +0.3
3,566,417 + +0.1
3,566,417 + +0.1
3,567,445 + -0.4
3,567,596 + +0.1
3,567,659 + Dsui_3327 0.18 +0.1
3,567,741 + Dsui_3327 0.29 +1.1
3,567,860 - Dsui_3327 0.46 -0.9
3,567,962 - Dsui_3327 0.60 -0.7
3,568,049 + Dsui_3327 0.72 -0.1
3,568,117 - +1.1
3,568,252 - +0.3
3,568,305 + +0.1
3,568,349 + +0.4
3,568,369 - -0.4

Or see this region's nucleotide sequence