Strain Fitness in Dechlorosoma suillum PS around Dsui_2995

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2993 and Dsui_2994 are separated by 11 nucleotidesDsui_2994 and Dsui_2995 are separated by 126 nucleotidesDsui_2995 and Dsui_2996 are separated by 144 nucleotides Dsui_2993: Dsui_2993 - hypothetical protein, at 3,202,533 to 3,203,900 _2993 Dsui_2994: Dsui_2994 - fructose-2,6-bisphosphatase, at 3,203,912 to 3,204,613 _2994 Dsui_2995: Dsui_2995 - hypothetical protein, at 3,204,740 to 3,205,330 _2995 Dsui_2996: Dsui_2996 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 3,205,475 to 3,207,289 _2996 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -1 0 1 2 3at 3203.960 kb on - strandat 3203.960 kb on - strandat 3204.154 kb on - strand, within Dsui_2994at 3204.172 kb on - strand, within Dsui_2994at 3204.193 kb on - strandat 3204.605 kb on - strandat 3204.639 kb on - strandat 3204.769 kb on + strandat 3204.797 kb on + strandat 3204.979 kb on - strand, within Dsui_2995at 3204.988 kb on - strand, within Dsui_2995at 3205.071 kb on - strand, within Dsui_2995at 3205.081 kb on - strand, within Dsui_2995at 3205.086 kb on - strand, within Dsui_2995at 3205.228 kb on + strandat 3205.236 kb on - strand, within Dsui_2995at 3205.302 kb on + strandat 3205.307 kb on + strandat 3205.384 kb on + strandat 3205.521 kb on - strandat 3205.677 kb on - strand, within Dsui_2996at 3205.702 kb on + strandat 3205.727 kb on + strand, within Dsui_2996at 3205.732 kb on + strand, within Dsui_2996at 3205.735 kb on - strand, within Dsui_2996at 3205.767 kb on - strand, within Dsui_2996at 3205.767 kb on - strand, within Dsui_2996at 3205.821 kb on + strand, within Dsui_2996at 3205.830 kb on - strand, within Dsui_2996at 3205.994 kb on + strand, within Dsui_2996at 3206.085 kb on - strand, within Dsui_2996at 3206.124 kb on - strand, within Dsui_2996at 3206.153 kb on - strand, within Dsui_2996at 3206.256 kb on + strand, within Dsui_2996

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,203,960 - +1.1
3,203,960 - -0.9
3,204,154 - Dsui_2994 0.34 -1.0
3,204,172 - Dsui_2994 0.37 -0.3
3,204,193 - +1.1
3,204,605 - -0.2
3,204,639 - +2.1
3,204,769 + +0.7
3,204,797 + +0.1
3,204,979 - Dsui_2995 0.40 +1.1
3,204,988 - Dsui_2995 0.42 -0.3
3,205,071 - Dsui_2995 0.56 -1.3
3,205,081 - Dsui_2995 0.58 +0.9
3,205,086 - Dsui_2995 0.59 +1.6
3,205,228 + +0.1
3,205,236 - Dsui_2995 0.84 +0.7
3,205,302 + -0.3
3,205,307 + +1.3
3,205,384 + +0.8
3,205,521 - -0.2
3,205,677 - Dsui_2996 0.11 -0.6
3,205,702 + +3.1
3,205,727 + Dsui_2996 0.14 -1.1
3,205,732 + Dsui_2996 0.14 +1.1
3,205,735 - Dsui_2996 0.14 +0.0
3,205,767 - Dsui_2996 0.16 +0.0
3,205,767 - Dsui_2996 0.16 +0.2
3,205,821 + Dsui_2996 0.19 +1.2
3,205,830 - Dsui_2996 0.20 +0.8
3,205,994 + Dsui_2996 0.29 +1.3
3,206,085 - Dsui_2996 0.34 +0.6
3,206,124 - Dsui_2996 0.36 +0.5
3,206,153 - Dsui_2996 0.37 -0.0
3,206,256 + Dsui_2996 0.43 -0.2

Or see this region's nucleotide sequence