Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2879 and Dsui_2880 are separated by 231 nucleotides Dsui_2880 and Dsui_2881 overlap by 4 nucleotides
Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505
_2879
Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080
_2880
Dsui_2881: Dsui_2881 - 8-amino-7-oxononanoate synthase, at 3,077,077 to 3,078,252
_2881
Position (kb)
3075
3076
3077
3078 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3074.882 kb on - strand, within Dsui_2879 at 3074.917 kb on - strand, within Dsui_2879 at 3075.027 kb on + strand at 3075.048 kb on + strand, within Dsui_2879 at 3075.062 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.149 kb on - strand, within Dsui_2879 at 3075.305 kb on - strand, within Dsui_2879 at 3075.399 kb on - strand at 3075.470 kb on - strand at 3075.526 kb on + strand at 3075.526 kb on + strand at 3075.528 kb on + strand at 3075.536 kb on - strand at 3075.656 kb on + strand at 3075.669 kb on + strand at 3075.687 kb on - strand at 3075.701 kb on + strand at 3075.720 kb on + strand at 3075.720 kb on - strand at 3075.733 kb on + strand at 3075.842 kb on + strand at 3075.858 kb on + strand at 3075.978 kb on - strand, within Dsui_2880 at 3076.112 kb on + strand, within Dsui_2880 at 3076.205 kb on - strand at 3076.245 kb on - strand, within Dsui_2880 at 3076.264 kb on - strand at 3076.264 kb on - strand, within Dsui_2880 at 3076.429 kb on + strand, within Dsui_2880 at 3076.455 kb on + strand, within Dsui_2880 at 3076.620 kb on - strand at 3076.629 kb on + strand, within Dsui_2880 at 3076.641 kb on + strand, within Dsui_2880 at 3076.649 kb on - strand at 3076.810 kb on + strand, within Dsui_2880 at 3076.831 kb on + strand, within Dsui_2880 at 3076.907 kb on - strand at 3076.954 kb on - strand at 3077.009 kb on - strand at 3077.111 kb on - strand at 3077.219 kb on + strand, within Dsui_2881 at 3077.227 kb on - strand at 3077.724 kb on - strand, within Dsui_2881 at 3077.838 kb on - strand, within Dsui_2881 at 3077.869 kb on - strand, within Dsui_2881 at 3077.915 kb on + strand, within Dsui_2881 at 3078.077 kb on + strand, within Dsui_2881
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 3,074,882 - Dsui_2879 0.58 -0.6 3,074,917 - Dsui_2879 0.61 -1.5 3,075,027 + +1.1 3,075,048 + Dsui_2879 0.69 -0.7 3,075,062 - Dsui_2879 0.70 -0.1 3,075,149 - Dsui_2879 0.76 +0.1 3,075,149 - Dsui_2879 0.76 +0.0 3,075,305 - Dsui_2879 0.87 -0.6 3,075,399 - -0.8 3,075,470 - +0.1 3,075,526 + +3.1 3,075,526 + -1.3 3,075,528 + +0.5 3,075,536 - +0.2 3,075,656 + -0.5 3,075,669 + -0.7 3,075,687 - -1.5 3,075,701 + -0.1 3,075,720 + +0.1 3,075,720 - +0.8 3,075,733 + -0.2 3,075,842 + +0.1 3,075,858 + -0.9 3,075,978 - Dsui_2880 0.18 -0.3 3,076,112 + Dsui_2880 0.28 -0.3 3,076,205 - +0.5 3,076,245 - Dsui_2880 0.38 +0.7 3,076,264 - +0.5 3,076,264 - Dsui_2880 0.39 +0.1 3,076,429 + Dsui_2880 0.51 +0.3 3,076,455 + Dsui_2880 0.53 -0.3 3,076,620 - +2.1 3,076,629 + Dsui_2880 0.66 +0.1 3,076,641 + Dsui_2880 0.67 -0.1 3,076,649 - +0.5 3,076,810 + Dsui_2880 0.80 +1.0 3,076,831 + Dsui_2880 0.81 +0.4 3,076,907 - +2.1 3,076,954 - +2.1 3,077,009 - +0.1 3,077,111 - +0.4 3,077,219 + Dsui_2881 0.12 +0.0 3,077,227 - +1.1 3,077,724 - Dsui_2881 0.55 -0.6 3,077,838 - Dsui_2881 0.65 -1.0 3,077,869 - Dsui_2881 0.67 -1.5 3,077,915 + Dsui_2881 0.71 +0.6 3,078,077 + Dsui_2881 0.85 -0.3
Or see this region's nucleotide sequence