Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2876 and Dsui_2877 overlap by 1 nucleotides Dsui_2877 and Dsui_2878 overlap by 7 nucleotides Dsui_2878 and Dsui_2879 are separated by 318 nucleotides
Dsui_2876: Dsui_2876 - RND family efflux transporter, MFP subunit, at 3,070,474 to 3,071,730
_2876
Dsui_2877: Dsui_2877 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,071,730 to 3,072,476
_2877
Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690
_2878
Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505
_2879
Position (kb)
3072
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3071.523 kb on + strand, within Dsui_2876 at 3071.800 kb on - strand at 3071.813 kb on - strand, within Dsui_2877 at 3071.921 kb on - strand at 3071.931 kb on - strand at 3072.069 kb on - strand at 3072.076 kb on - strand at 3072.148 kb on + strand, within Dsui_2877 at 3072.187 kb on - strand, within Dsui_2877 at 3072.246 kb on + strand, within Dsui_2877 at 3072.310 kb on - strand at 3072.358 kb on + strand, within Dsui_2877 at 3072.358 kb on + strand, within Dsui_2877 at 3072.599 kb on + strand, within Dsui_2878 at 3072.711 kb on + strand, within Dsui_2878 at 3072.781 kb on - strand, within Dsui_2878 at 3072.883 kb on - strand at 3072.897 kb on + strand, within Dsui_2878 at 3073.085 kb on + strand, within Dsui_2878 at 3073.228 kb on - strand, within Dsui_2878 at 3073.417 kb on + strand, within Dsui_2878 at 3073.514 kb on - strand, within Dsui_2878 at 3073.715 kb on - strand at 3073.716 kb on + strand at 3073.729 kb on + strand at 3073.764 kb on + strand at 3073.805 kb on - strand at 3073.821 kb on + strand at 3073.829 kb on - strand at 3074.155 kb on - strand at 3074.588 kb on + strand, within Dsui_2879 at 3074.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 3,071,523 + Dsui_2876 0.83 -0.3 3,071,800 - -0.5 3,071,813 - Dsui_2877 0.11 +1.1 3,071,921 - +1.1 3,071,931 - +0.5 3,072,069 - +1.1 3,072,076 - +1.1 3,072,148 + Dsui_2877 0.56 -0.3 3,072,187 - Dsui_2877 0.61 +0.1 3,072,246 + Dsui_2877 0.69 -2.0 3,072,310 - +2.1 3,072,358 + Dsui_2877 0.84 +0.7 3,072,358 + Dsui_2877 0.84 -0.7 3,072,599 + Dsui_2878 0.11 -0.2 3,072,711 + Dsui_2878 0.20 +0.4 3,072,781 - Dsui_2878 0.25 +0.9 3,072,883 - -0.2 3,072,897 + Dsui_2878 0.35 -0.2 3,073,085 + Dsui_2878 0.50 +0.2 3,073,228 - Dsui_2878 0.62 +0.1 3,073,417 + Dsui_2878 0.78 +1.2 3,073,514 - Dsui_2878 0.86 +1.1 3,073,715 - +1.0 3,073,716 + +0.5 3,073,729 + -0.5 3,073,764 + +1.0 3,073,805 - +2.1 3,073,821 + +0.4 3,073,829 - +0.4 3,074,155 - +0.0 3,074,588 + Dsui_2879 0.39 -0.5 3,074,685 + +0.1
Or see this region's nucleotide sequence