Strain Fitness in Dechlorosoma suillum PS around Dsui_2696

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2695 and Dsui_2696 are separated by 5 nucleotidesDsui_2696 and Dsui_2697 are separated by 57 nucleotidesDsui_2697 and Dsui_2698 are separated by 2 nucleotides Dsui_2695: Dsui_2695 - methionine aminopeptidase, type I, at 2,846,891 to 2,847,688 _2695 Dsui_2696: Dsui_2696 - (protein-PII) uridylyltransferase, at 2,847,694 to 2,850,285 _2696 Dsui_2697: Dsui_2697 - peptide deformylase, at 2,850,343 to 2,850,891 _2697 Dsui_2698: Dsui_2698 - purine nucleoside phosphorylase, at 2,850,894 to 2,851,646 _2698 Position (kb) 2847 2848 2849 2850 2851Strain fitness (log2 ratio) -2 -1 0 1 2at 2846.830 kb on + strandat 2846.830 kb on + strandat 2846.830 kb on + strandat 2846.844 kb on - strandat 2846.847 kb on + strandat 2846.847 kb on + strandat 2846.860 kb on + strandat 2846.871 kb on + strandat 2846.982 kb on + strand, within Dsui_2695at 2846.984 kb on - strand, within Dsui_2695at 2847.065 kb on + strand, within Dsui_2695at 2847.126 kb on + strand, within Dsui_2695at 2847.134 kb on - strand, within Dsui_2695at 2847.210 kb on - strandat 2847.229 kb on - strand, within Dsui_2695at 2847.254 kb on + strand, within Dsui_2695at 2847.317 kb on - strand, within Dsui_2695at 2847.319 kb on + strand, within Dsui_2695at 2847.337 kb on + strand, within Dsui_2695at 2847.449 kb on + strand, within Dsui_2695at 2847.450 kb on - strand, within Dsui_2695at 2847.466 kb on + strand, within Dsui_2695at 2847.494 kb on + strand, within Dsui_2695at 2847.515 kb on - strand, within Dsui_2695at 2847.644 kb on - strandat 2847.649 kb on - strandat 2847.667 kb on + strandat 2847.696 kb on + strandat 2847.715 kb on + strandat 2847.830 kb on + strandat 2847.838 kb on - strandat 2847.878 kb on + strandat 2847.918 kb on + strandat 2848.053 kb on - strandat 2848.115 kb on - strand, within Dsui_2696at 2848.175 kb on + strand, within Dsui_2696at 2848.191 kb on - strand, within Dsui_2696at 2848.226 kb on - strand, within Dsui_2696at 2848.299 kb on + strand, within Dsui_2696at 2848.306 kb on - strand, within Dsui_2696at 2848.338 kb on + strandat 2848.362 kb on - strand, within Dsui_2696at 2848.438 kb on + strand, within Dsui_2696at 2848.601 kb on - strandat 2848.751 kb on + strand, within Dsui_2696at 2848.804 kb on - strandat 2848.886 kb on - strand, within Dsui_2696at 2848.960 kb on - strand, within Dsui_2696at 2848.980 kb on + strand, within Dsui_2696at 2849.001 kb on + strand, within Dsui_2696at 2849.039 kb on - strand, within Dsui_2696at 2849.144 kb on - strand, within Dsui_2696at 2849.146 kb on + strand, within Dsui_2696at 2849.159 kb on - strand, within Dsui_2696at 2849.191 kb on + strand, within Dsui_2696at 2849.194 kb on - strandat 2849.288 kb on - strand, within Dsui_2696at 2849.291 kb on + strand, within Dsui_2696at 2849.299 kb on - strand, within Dsui_2696at 2849.332 kb on + strand, within Dsui_2696at 2849.376 kb on - strand, within Dsui_2696at 2849.420 kb on + strand, within Dsui_2696at 2849.428 kb on - strand, within Dsui_2696at 2849.428 kb on - strandat 2849.463 kb on + strand, within Dsui_2696at 2849.498 kb on - strand, within Dsui_2696at 2849.584 kb on + strand, within Dsui_2696at 2849.695 kb on + strand, within Dsui_2696at 2849.772 kb on - strand, within Dsui_2696at 2849.855 kb on - strand, within Dsui_2696at 2849.890 kb on - strand, within Dsui_2696at 2849.890 kb on - strand, within Dsui_2696at 2849.952 kb on + strand, within Dsui_2696at 2850.050 kb on - strandat 2850.124 kb on + strandat 2850.124 kb on + strandat 2850.221 kb on + strandat 2850.221 kb on + strandat 2850.281 kb on - strandat 2850.293 kb on - strandat 2850.299 kb on - strandat 2850.462 kb on + strand, within Dsui_2697at 2850.470 kb on - strand, within Dsui_2697at 2850.490 kb on - strand, within Dsui_2697at 2850.584 kb on - strand, within Dsui_2697at 2850.619 kb on + strandat 2850.674 kb on - strand, within Dsui_2697at 2850.722 kb on - strand, within Dsui_2697at 2850.821 kb on - strand, within Dsui_2697at 2851.056 kb on - strand, within Dsui_2698at 2851.114 kb on + strand, within Dsui_2698at 2851.114 kb on + strandat 2851.132 kb on + strand, within Dsui_2698at 2851.163 kb on + strand, within Dsui_2698at 2851.182 kb on + strand, within Dsui_2698at 2851.263 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,846,830 + -0.6
2,846,830 + -0.3
2,846,830 + +0.5
2,846,844 - +2.3
2,846,847 + +0.3
2,846,847 + -1.1
2,846,860 + -0.3
2,846,871 + +0.5
2,846,982 + Dsui_2695 0.11 +0.6
2,846,984 - Dsui_2695 0.12 -1.2
2,847,065 + Dsui_2695 0.22 +0.6
2,847,126 + Dsui_2695 0.29 +0.5
2,847,134 - Dsui_2695 0.30 -0.8
2,847,210 - +1.7
2,847,229 - Dsui_2695 0.42 +0.2
2,847,254 + Dsui_2695 0.45 +0.3
2,847,317 - Dsui_2695 0.53 -0.7
2,847,319 + Dsui_2695 0.54 +0.3
2,847,337 + Dsui_2695 0.56 +0.3
2,847,449 + Dsui_2695 0.70 +0.4
2,847,450 - Dsui_2695 0.70 +0.1
2,847,466 + Dsui_2695 0.72 +0.4
2,847,494 + Dsui_2695 0.76 +0.4
2,847,515 - Dsui_2695 0.78 +1.0
2,847,644 - -1.4
2,847,649 - -0.3
2,847,667 + +0.4
2,847,696 + +0.4
2,847,715 + -0.5
2,847,830 + -0.9
2,847,838 - -0.9
2,847,878 + -0.3
2,847,918 + -0.1
2,848,053 - -0.7
2,848,115 - Dsui_2696 0.16 -1.2
2,848,175 + Dsui_2696 0.19 -0.4
2,848,191 - Dsui_2696 0.19 +0.2
2,848,226 - Dsui_2696 0.21 -0.6
2,848,299 + Dsui_2696 0.23 -1.8
2,848,306 - Dsui_2696 0.24 -0.8
2,848,338 + +1.7
2,848,362 - Dsui_2696 0.26 +0.2
2,848,438 + Dsui_2696 0.29 -1.0
2,848,601 - +0.3
2,848,751 + Dsui_2696 0.41 +0.7
2,848,804 - +1.3
2,848,886 - Dsui_2696 0.46 +0.0
2,848,960 - Dsui_2696 0.49 -1.0
2,848,980 + Dsui_2696 0.50 -0.5
2,849,001 + Dsui_2696 0.50 -0.3
2,849,039 - Dsui_2696 0.52 -0.7
2,849,144 - Dsui_2696 0.56 -0.4
2,849,146 + Dsui_2696 0.56 +0.1
2,849,159 - Dsui_2696 0.57 +0.4
2,849,191 + Dsui_2696 0.58 +0.7
2,849,194 - +1.3
2,849,288 - Dsui_2696 0.61 -0.7
2,849,291 + Dsui_2696 0.62 +0.6
2,849,299 - Dsui_2696 0.62 -1.0
2,849,332 + Dsui_2696 0.63 -0.3
2,849,376 - Dsui_2696 0.65 -1.3
2,849,420 + Dsui_2696 0.67 +0.2
2,849,428 - Dsui_2696 0.67 -1.0
2,849,428 - -0.3
2,849,463 + Dsui_2696 0.68 -0.3
2,849,498 - Dsui_2696 0.70 -0.2
2,849,584 + Dsui_2696 0.73 -0.6
2,849,695 + Dsui_2696 0.77 -0.6
2,849,772 - Dsui_2696 0.80 -0.2
2,849,855 - Dsui_2696 0.83 -1.1
2,849,890 - Dsui_2696 0.85 -1.4
2,849,890 - Dsui_2696 0.85 -0.0
2,849,952 + Dsui_2696 0.87 +0.1
2,850,050 - -0.4
2,850,124 + -0.8
2,850,124 + -1.7
2,850,221 + -0.7
2,850,221 + -0.9
2,850,281 - +1.1
2,850,293 - -0.0
2,850,299 - +0.7
2,850,462 + Dsui_2697 0.22 -0.9
2,850,470 - Dsui_2697 0.23 +0.3
2,850,490 - Dsui_2697 0.27 +0.6
2,850,584 - Dsui_2697 0.44 -0.5
2,850,619 + -0.3
2,850,674 - Dsui_2697 0.60 +0.1
2,850,722 - Dsui_2697 0.69 +0.4
2,850,821 - Dsui_2697 0.87 +0.2
2,851,056 - Dsui_2698 0.22 +0.2
2,851,114 + Dsui_2698 0.29 -0.4
2,851,114 + +2.3
2,851,132 + Dsui_2698 0.32 +0.4
2,851,163 + Dsui_2698 0.36 +0.2
2,851,182 + Dsui_2698 0.38 -1.7
2,851,263 + +1.7

Or see this region's nucleotide sequence