Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2481 and Dsui_2482 are separated by 71 nucleotides Dsui_2482 and Dsui_2483 overlap by 11 nucleotides Dsui_2483 and Dsui_2484 are separated by 28 nucleotides Dsui_2484 and Dsui_2485 are separated by 33 nucleotides
Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469
_2481
Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993
_2482
Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711
_2483
Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543
_2484
Dsui_2485: Dsui_2485 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 2,634,577 to 2,634,942
_2485
Position (kb)
2632
2633
2634 Strain fitness (log2 ratio)
-1
0
1 at 2632.499 kb on - strand at 2632.524 kb on - strand at 2632.524 kb on - strand at 2632.545 kb on - strand at 2632.975 kb on - strand at 2632.998 kb on - strand at 2633.732 kb on - strand at 2633.755 kb on - strand at 2633.758 kb on - strand at 2633.775 kb on - strand at 2633.829 kb on - strand, within Dsui_2484 at 2634.129 kb on + strand, within Dsui_2484 at 2634.142 kb on + strand, within Dsui_2484 at 2634.379 kb on - strand, within Dsui_2484 at 2634.404 kb on + strand, within Dsui_2484 at 2634.515 kb on + strand at 2634.537 kb on + strand at 2634.611 kb on + strand at 2634.656 kb on - strand, within Dsui_2485 at 2634.659 kb on + strand, within Dsui_2485 at 2634.708 kb on + strand, within Dsui_2485
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,632,499 - -0.1 2,632,524 - +0.3 2,632,524 - +1.5 2,632,545 - +0.1 2,632,975 - -0.1 2,632,998 - +0.5 2,633,732 - +0.2 2,633,755 - +0.3 2,633,758 - +0.0 2,633,775 - +0.7 2,633,829 - Dsui_2484 0.11 +0.2 2,634,129 + Dsui_2484 0.48 +1.3 2,634,142 + Dsui_2484 0.50 +0.9 2,634,379 - Dsui_2484 0.79 +0.1 2,634,404 + Dsui_2484 0.83 +1.1 2,634,515 + -0.4 2,634,537 + +0.4 2,634,611 + -0.0 2,634,656 - Dsui_2485 0.22 +0.2 2,634,659 + Dsui_2485 0.22 +1.4 2,634,708 + Dsui_2485 0.36 +0.2
Or see this region's nucleotide sequence