Strain Fitness in Dechlorosoma suillum PS around Dsui_2463

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2461 and Dsui_2462 are separated by 30 nucleotidesDsui_2462 and Dsui_2463 are separated by 67 nucleotidesDsui_2463 and Dsui_2464 are separated by 158 nucleotidesDsui_2464 and Dsui_2465 overlap by 4 nucleotides Dsui_2461: Dsui_2461 - GTP-binding protein Era, at 2,618,720 to 2,619,613 _2461 Dsui_2462: Dsui_2462 - DNA repair protein RecO, at 2,619,644 to 2,620,357 _2462 Dsui_2463: Dsui_2463 - pyridoxine 5''-phosphate synthase, at 2,620,425 to 2,621,177 _2463 Dsui_2464: Dsui_2464 - holo-(acyl-carrier-protein) synthase, at 2,621,336 to 2,621,725 _2464 Dsui_2465: Dsui_2465 - beta-glucosidase-like glycosyl hydrolase, at 2,621,722 to 2,622,747 _2465 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -1 0 1 2at 2619.597 kb on + strandat 2619.634 kb on + strandat 2619.659 kb on + strandat 2619.683 kb on + strandat 2619.747 kb on + strand, within Dsui_2462at 2619.747 kb on + strand, within Dsui_2462at 2619.760 kb on + strand, within Dsui_2462at 2619.818 kb on + strand, within Dsui_2462at 2619.829 kb on + strand, within Dsui_2462at 2619.862 kb on + strand, within Dsui_2462at 2619.949 kb on - strand, within Dsui_2462at 2619.987 kb on - strand, within Dsui_2462at 2619.995 kb on + strand, within Dsui_2462at 2620.037 kb on + strand, within Dsui_2462at 2620.091 kb on - strand, within Dsui_2462at 2620.116 kb on - strand, within Dsui_2462at 2620.145 kb on - strandat 2620.248 kb on + strand, within Dsui_2462at 2620.323 kb on - strandat 2621.187 kb on - strandat 2621.188 kb on + strandat 2621.211 kb on + strandat 2621.211 kb on + strandat 2621.246 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.258 kb on + strandat 2621.266 kb on - strandat 2621.266 kb on - strandat 2621.266 kb on - strandat 2621.267 kb on + strandat 2621.316 kb on - strandat 2621.778 kb on + strandat 2621.803 kb on + strandat 2621.811 kb on - strandat 2621.828 kb on + strand, within Dsui_2465at 2621.868 kb on + strand, within Dsui_2465at 2621.897 kb on - strand, within Dsui_2465at 2621.897 kb on - strandat 2621.897 kb on - strand, within Dsui_2465at 2622.046 kb on + strand, within Dsui_2465at 2622.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,619,597 + +0.2
2,619,634 + +0.2
2,619,659 + +0.4
2,619,683 + -0.2
2,619,747 + Dsui_2462 0.14 +0.5
2,619,747 + Dsui_2462 0.14 +0.5
2,619,760 + Dsui_2462 0.16 +0.1
2,619,818 + Dsui_2462 0.24 +0.5
2,619,829 + Dsui_2462 0.26 +0.4
2,619,862 + Dsui_2462 0.31 +0.0
2,619,949 - Dsui_2462 0.43 -0.1
2,619,987 - Dsui_2462 0.48 +0.1
2,619,995 + Dsui_2462 0.49 +0.2
2,620,037 + Dsui_2462 0.55 +0.1
2,620,091 - Dsui_2462 0.63 -1.7
2,620,116 - Dsui_2462 0.66 +0.9
2,620,145 - -0.1
2,620,248 + Dsui_2462 0.85 +0.1
2,620,323 - -0.3
2,621,187 - +1.3
2,621,188 + -0.3
2,621,211 + +0.2
2,621,211 + -0.1
2,621,246 + -0.8
2,621,258 + -0.1
2,621,258 + -0.0
2,621,258 + +0.1
2,621,258 + +0.5
2,621,258 + +0.4
2,621,266 - -0.3
2,621,266 - +0.3
2,621,266 - -0.1
2,621,267 + -0.1
2,621,316 - +0.3
2,621,778 + -0.3
2,621,803 + +0.3
2,621,811 - +2.3
2,621,828 + Dsui_2465 0.10 +0.1
2,621,868 + Dsui_2465 0.14 -0.4
2,621,897 - Dsui_2465 0.17 -1.4
2,621,897 - +0.7
2,621,897 - Dsui_2465 0.17 -1.4
2,622,046 + Dsui_2465 0.32 -0.4
2,622,053 - +0.5

Or see this region's nucleotide sequence