Strain Fitness in Dechlorosoma suillum PS around Dsui_2123

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2122 and Dsui_2123 are separated by 135 nucleotidesDsui_2123 and Dsui_2124 are separated by 326 nucleotides Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770 _2122 Dsui_2123: Dsui_2123 - EAL domain-containing protein, at 2,248,906 to 2,249,853 _2123 Dsui_2124: Dsui_2124 - methyl-accepting chemotaxis protein, at 2,250,180 to 2,251,283 _2124 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -2 -1 0 1 2at 2247.920 kb on - strand, within Dsui_2122at 2247.930 kb on + strand, within Dsui_2122at 2247.930 kb on + strand, within Dsui_2122at 2247.938 kb on - strandat 2248.018 kb on + strandat 2248.033 kb on + strandat 2248.040 kb on + strand, within Dsui_2122at 2248.130 kb on + strand, within Dsui_2122at 2248.138 kb on - strand, within Dsui_2122at 2248.166 kb on - strandat 2248.201 kb on + strand, within Dsui_2122at 2248.209 kb on - strand, within Dsui_2122at 2248.219 kb on - strandat 2248.235 kb on + strand, within Dsui_2122at 2248.278 kb on - strandat 2248.303 kb on - strandat 2248.412 kb on - strand, within Dsui_2122at 2248.483 kb on - strandat 2248.508 kb on + strand, within Dsui_2122at 2248.651 kb on - strandat 2248.670 kb on - strandat 2249.022 kb on + strandat 2249.159 kb on - strandat 2249.245 kb on + strandat 2249.258 kb on - strand, within Dsui_2123at 2249.351 kb on + strandat 2249.507 kb on - strand, within Dsui_2123at 2249.601 kb on - strandat 2249.664 kb on - strand, within Dsui_2123at 2249.774 kb on - strandat 2249.931 kb on - strandat 2250.257 kb on + strandat 2250.333 kb on + strandat 2250.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,247,920 - Dsui_2122 0.19 +2.6
2,247,930 + Dsui_2122 0.20 +0.6
2,247,930 + Dsui_2122 0.20 -0.6
2,247,938 - +0.9
2,248,018 + -0.4
2,248,033 + +1.2
2,248,040 + Dsui_2122 0.30 -0.4
2,248,130 + Dsui_2122 0.39 -0.2
2,248,138 - Dsui_2122 0.40 -0.1
2,248,166 - +2.2
2,248,201 + Dsui_2122 0.46 -0.4
2,248,209 - Dsui_2122 0.46 +0.4
2,248,219 - +1.2
2,248,235 + Dsui_2122 0.49 -0.4
2,248,278 - +2.2
2,248,303 - +2.2
2,248,412 - Dsui_2122 0.66 +0.4
2,248,483 - +0.6
2,248,508 + Dsui_2122 0.75 +0.6
2,248,651 - +2.6
2,248,670 - +1.2
2,249,022 + +0.2
2,249,159 - +0.2
2,249,245 + -0.1
2,249,258 - Dsui_2123 0.37 -0.5
2,249,351 + -0.4
2,249,507 - Dsui_2123 0.63 -2.2
2,249,601 - +1.6
2,249,664 - Dsui_2123 0.80 -0.9
2,249,774 - -1.6
2,249,931 - -0.5
2,250,257 + -0.1
2,250,333 + +2.2
2,250,761 + +2.2

Or see this region's nucleotide sequence