Strain Fitness in Dechlorosoma suillum PS around Dsui_0749

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0748 and Dsui_0749 overlap by 4 nucleotidesDsui_0749 and Dsui_0750 are separated by 23 nucleotidesDsui_0750 and Dsui_0751 are separated by 1 nucleotides Dsui_0748: Dsui_0748 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 746,304 to 747,302 _0748 Dsui_0749: Dsui_0749 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 747,299 to 750,160 _0749 Dsui_0750: Dsui_0750 - hypothetical protein, at 750,184 to 750,516 _0750 Dsui_0751: Dsui_0751 - Eco57I restriction endonuclease, at 750,518 to 751,729 _0751 Position (kb) 747 748 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2at 746.301 kb on + strandat 746.301 kb on + strandat 746.301 kb on + strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.358 kb on + strandat 746.493 kb on - strand, within Dsui_0748at 746.557 kb on - strand, within Dsui_0748at 746.593 kb on + strand, within Dsui_0748at 746.614 kb on + strand, within Dsui_0748at 746.667 kb on + strand, within Dsui_0748at 746.710 kb on - strandat 746.710 kb on - strand, within Dsui_0748at 746.710 kb on - strandat 746.754 kb on - strandat 746.783 kb on + strand, within Dsui_0748at 746.862 kb on + strand, within Dsui_0748at 746.919 kb on + strand, within Dsui_0748at 746.940 kb on + strand, within Dsui_0748at 747.108 kb on - strand, within Dsui_0748at 747.110 kb on + strand, within Dsui_0748at 747.110 kb on + strand, within Dsui_0748at 747.127 kb on + strand, within Dsui_0748at 747.127 kb on + strand, within Dsui_0748at 747.162 kb on - strand, within Dsui_0748at 747.311 kb on + strandat 747.404 kb on + strandat 747.523 kb on + strandat 747.576 kb on + strandat 747.580 kb on + strandat 747.606 kb on - strand, within Dsui_0749at 747.655 kb on - strand, within Dsui_0749at 747.698 kb on + strand, within Dsui_0749at 747.724 kb on + strand, within Dsui_0749at 747.797 kb on - strandat 747.813 kb on - strand, within Dsui_0749at 747.868 kb on - strandat 747.898 kb on - strand, within Dsui_0749at 747.902 kb on + strand, within Dsui_0749at 748.068 kb on + strand, within Dsui_0749at 748.070 kb on - strand, within Dsui_0749at 748.099 kb on + strand, within Dsui_0749at 748.138 kb on - strandat 748.148 kb on - strandat 748.191 kb on + strand, within Dsui_0749at 748.199 kb on + strand, within Dsui_0749at 748.239 kb on + strand, within Dsui_0749at 748.270 kb on - strand, within Dsui_0749at 748.271 kb on - strand, within Dsui_0749at 748.302 kb on - strand, within Dsui_0749at 748.342 kb on + strand, within Dsui_0749at 748.375 kb on - strandat 748.441 kb on + strand, within Dsui_0749at 748.454 kb on - strand, within Dsui_0749at 748.460 kb on - strand, within Dsui_0749at 748.510 kb on + strand, within Dsui_0749at 748.518 kb on - strand, within Dsui_0749at 748.526 kb on - strand, within Dsui_0749at 748.649 kb on - strand, within Dsui_0749at 748.649 kb on - strand, within Dsui_0749at 748.693 kb on - strand, within Dsui_0749at 748.695 kb on + strand, within Dsui_0749at 748.842 kb on + strand, within Dsui_0749at 748.995 kb on + strand, within Dsui_0749at 749.013 kb on - strand, within Dsui_0749at 749.061 kb on + strand, within Dsui_0749at 749.129 kb on - strandat 749.188 kb on + strand, within Dsui_0749at 749.189 kb on + strand, within Dsui_0749at 749.226 kb on + strand, within Dsui_0749at 749.229 kb on - strand, within Dsui_0749at 749.262 kb on + strand, within Dsui_0749at 749.297 kb on + strand, within Dsui_0749at 749.302 kb on + strand, within Dsui_0749at 749.403 kb on + strand, within Dsui_0749at 749.422 kb on - strand, within Dsui_0749at 749.469 kb on - strand, within Dsui_0749at 749.512 kb on + strand, within Dsui_0749at 749.576 kb on + strand, within Dsui_0749at 749.623 kb on - strand, within Dsui_0749at 749.635 kb on - strand, within Dsui_0749at 749.640 kb on - strandat 749.670 kb on + strand, within Dsui_0749at 749.677 kb on + strand, within Dsui_0749at 749.685 kb on - strand, within Dsui_0749at 749.885 kb on + strandat 749.909 kb on + strandat 749.922 kb on - strandat 749.998 kb on - strandat 750.102 kb on - strandat 750.143 kb on - strandat 750.203 kb on + strandat 750.290 kb on - strand, within Dsui_0750at 750.373 kb on + strand, within Dsui_0750at 750.387 kb on + strandat 750.399 kb on + strand, within Dsui_0750at 750.399 kb on + strand, within Dsui_0750at 750.407 kb on - strand, within Dsui_0750at 750.419 kb on - strand, within Dsui_0750at 750.425 kb on - strand, within Dsui_0750at 750.560 kb on + strandat 750.577 kb on - strandat 750.620 kb on + strandat 750.706 kb on - strand, within Dsui_0751at 750.797 kb on - strand, within Dsui_0751at 750.840 kb on - strand, within Dsui_0751at 750.947 kb on + strandat 750.965 kb on + strand, within Dsui_0751at 750.980 kb on - strand, within Dsui_0751at 751.044 kb on + strand, within Dsui_0751at 751.051 kb on + strand, within Dsui_0751at 751.052 kb on - strand, within Dsui_0751at 751.059 kb on - strand, within Dsui_0751at 751.106 kb on - strand, within Dsui_0751

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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746,301 + +1.7
746,301 + +1.1
746,301 + -0.1
746,309 - +0.2
746,309 - +0.5
746,309 - +0.1
746,309 - -0.7
746,358 + -0.5
746,493 - Dsui_0748 0.19 +0.3
746,557 - Dsui_0748 0.25 -0.5
746,593 + Dsui_0748 0.29 +2.1
746,614 + Dsui_0748 0.31 -0.4
746,667 + Dsui_0748 0.36 -1.0
746,710 - +2.1
746,710 - Dsui_0748 0.41 -0.7
746,710 - -0.5
746,754 - -0.2
746,783 + Dsui_0748 0.48 -0.1
746,862 + Dsui_0748 0.56 +0.0
746,919 + Dsui_0748 0.62 +0.5
746,940 + Dsui_0748 0.64 -0.7
747,108 - Dsui_0748 0.80 -1.8
747,110 + Dsui_0748 0.81 -0.9
747,110 + Dsui_0748 0.81 +0.6
747,127 + Dsui_0748 0.82 -0.4
747,127 + Dsui_0748 0.82 -0.5
747,162 - Dsui_0748 0.86 -1.4
747,311 + +0.4
747,404 + -0.3
747,523 + +2.1
747,576 + -0.1
747,580 + +0.2
747,606 - Dsui_0749 0.11 +0.4
747,655 - Dsui_0749 0.12 -0.6
747,698 + Dsui_0749 0.14 +0.6
747,724 + Dsui_0749 0.15 +0.3
747,797 - +1.1
747,813 - Dsui_0749 0.18 -0.5
747,868 - +0.5
747,898 - Dsui_0749 0.21 -0.1
747,902 + Dsui_0749 0.21 -0.2
748,068 + Dsui_0749 0.27 -0.1
748,070 - Dsui_0749 0.27 +1.0
748,099 + Dsui_0749 0.28 +0.2
748,138 - +1.1
748,148 - +0.1
748,191 + Dsui_0749 0.31 -0.2
748,199 + Dsui_0749 0.31 -0.3
748,239 + Dsui_0749 0.33 -0.7
748,270 - Dsui_0749 0.34 +0.2
748,271 - Dsui_0749 0.34 +0.3
748,302 - Dsui_0749 0.35 -1.6
748,342 + Dsui_0749 0.36 -0.7
748,375 - -0.5
748,441 + Dsui_0749 0.40 -1.3
748,454 - Dsui_0749 0.40 +0.1
748,460 - Dsui_0749 0.41 +0.9
748,510 + Dsui_0749 0.42 -0.1
748,518 - Dsui_0749 0.43 -0.3
748,526 - Dsui_0749 0.43 -0.7
748,649 - Dsui_0749 0.47 +0.5
748,649 - Dsui_0749 0.47 +0.2
748,693 - Dsui_0749 0.49 +0.1
748,695 + Dsui_0749 0.49 +0.0
748,842 + Dsui_0749 0.54 -0.1
748,995 + Dsui_0749 0.59 -0.6
749,013 - Dsui_0749 0.60 -0.4
749,061 + Dsui_0749 0.62 -0.1
749,129 - +1.1
749,188 + Dsui_0749 0.66 -0.3
749,189 + Dsui_0749 0.66 +1.5
749,226 + Dsui_0749 0.67 +0.3
749,229 - Dsui_0749 0.67 +0.6
749,262 + Dsui_0749 0.69 -0.0
749,297 + Dsui_0749 0.70 +0.6
749,302 + Dsui_0749 0.70 +0.3
749,403 + Dsui_0749 0.74 +1.1
749,422 - Dsui_0749 0.74 +0.7
749,469 - Dsui_0749 0.76 +0.9
749,512 + Dsui_0749 0.77 +0.3
749,576 + Dsui_0749 0.80 -0.9
749,623 - Dsui_0749 0.81 +0.6
749,635 - Dsui_0749 0.82 -0.5
749,640 - +0.8
749,670 + Dsui_0749 0.83 -0.1
749,677 + Dsui_0749 0.83 -1.4
749,685 - Dsui_0749 0.83 -0.4
749,885 + -0.5
749,909 + -0.1
749,922 - +0.3
749,998 - +0.4
750,102 - -0.5
750,143 - -0.2
750,203 + -1.2
750,290 - Dsui_0750 0.32 -0.4
750,373 + Dsui_0750 0.57 -0.0
750,387 + +2.1
750,399 + Dsui_0750 0.65 +0.5
750,399 + Dsui_0750 0.65 -1.7
750,407 - Dsui_0750 0.67 +0.1
750,419 - Dsui_0750 0.71 +0.4
750,425 - Dsui_0750 0.72 -0.4
750,560 + -0.4
750,577 - -1.5
750,620 + +0.9
750,706 - Dsui_0751 0.16 -0.7
750,797 - Dsui_0751 0.23 +0.1
750,840 - Dsui_0751 0.27 +0.3
750,947 + +2.1
750,965 + Dsui_0751 0.37 -1.0
750,980 - Dsui_0751 0.38 +0.1
751,044 + Dsui_0751 0.43 +0.2
751,051 + Dsui_0751 0.44 +0.5
751,052 - Dsui_0751 0.44 +1.5
751,059 - Dsui_0751 0.45 +1.1
751,106 - Dsui_0751 0.49 +0.9

Or see this region's nucleotide sequence