Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0292 and Dsui_0293 are separated by 61 nucleotides Dsui_0293 and Dsui_0294 are separated by 70 nucleotides Dsui_0294 and Dsui_0295 are separated by 19 nucleotides
Dsui_0292: Dsui_0292 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 291,307 to 292,698
_0292
Dsui_0293: Dsui_0293 - PilZ domain-containing protein, at 292,760 to 293,338
_0293
Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920
_0294
Dsui_0295: Dsui_0295 - hypothetical protein, at 294,940 to 297,729
_0295
Position (kb) 293
294
295 Strain fitness (log2 ratio) -1
0
1
2 at 292.470 kb on + strand at 292.912 kb on + strand at 292.929 kb on - strand, within Dsui_0293 at 292.965 kb on - strand, within Dsui_0293 at 292.966 kb on - strand, within Dsui_0293 at 293.014 kb on + strand, within Dsui_0293 at 293.144 kb on + strand, within Dsui_0293 at 293.209 kb on - strand, within Dsui_0293 at 293.251 kb on - strand, within Dsui_0293 at 293.269 kb on - strand, within Dsui_0293 at 293.343 kb on + strand at 293.519 kb on + strand at 293.591 kb on - strand, within Dsui_0294 at 293.633 kb on + strand, within Dsui_0294 at 293.687 kb on + strand, within Dsui_0294 at 293.711 kb on + strand at 293.826 kb on - strand, within Dsui_0294 at 293.833 kb on + strand, within Dsui_0294 at 293.868 kb on - strand, within Dsui_0294 at 293.900 kb on + strand, within Dsui_0294 at 293.974 kb on + strand at 294.021 kb on + strand, within Dsui_0294 at 294.043 kb on + strand at 294.053 kb on + strand, within Dsui_0294 at 294.200 kb on - strand at 294.268 kb on - strand, within Dsui_0294 at 294.324 kb on + strand, within Dsui_0294 at 294.332 kb on - strand at 294.339 kb on + strand, within Dsui_0294 at 294.512 kb on + strand, within Dsui_0294 at 294.514 kb on + strand, within Dsui_0294 at 294.557 kb on + strand, within Dsui_0294 at 294.577 kb on - strand, within Dsui_0294 at 294.599 kb on + strand, within Dsui_0294 at 294.619 kb on + strand, within Dsui_0294 at 294.719 kb on + strand, within Dsui_0294 at 294.727 kb on - strand at 295.053 kb on + strand at 295.079 kb on + strand at 295.112 kb on + strand at 295.120 kb on - strand at 295.122 kb on + strand at 295.144 kb on - strand at 295.154 kb on - strand at 295.177 kb on + strand at 295.190 kb on + strand at 295.201 kb on + strand at 295.209 kb on - strand at 295.309 kb on + strand at 295.345 kb on + strand, within Dsui_0295 at 295.350 kb on + strand, within Dsui_0295 at 295.381 kb on - strand at 295.418 kb on - strand at 295.455 kb on - strand at 295.472 kb on - strand, within Dsui_0295 at 295.472 kb on - strand, within Dsui_0295 at 295.581 kb on - strand at 295.731 kb on + strand at 295.739 kb on - strand, within Dsui_0295 at 295.776 kb on + strand, within Dsui_0295 at 295.826 kb on - strand at 295.869 kb on - strand, within Dsui_0295 at 295.885 kb on + strand, within Dsui_0295 at 295.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 292,470 + +1.1 292,912 + +1.1 292,929 - Dsui_0293 0.29 -0.0 292,965 - Dsui_0293 0.35 +1.1 292,966 - Dsui_0293 0.36 -0.4 293,014 + Dsui_0293 0.44 +0.9 293,144 + Dsui_0293 0.66 -0.9 293,209 - Dsui_0293 0.78 +0.4 293,251 - Dsui_0293 0.85 +0.4 293,269 - Dsui_0293 0.88 +0.0 293,343 + -0.3 293,519 + +1.4 293,591 - Dsui_0294 0.12 +2.7 293,633 + Dsui_0294 0.15 +0.3 293,687 + Dsui_0294 0.18 +0.1 293,711 + +0.1 293,826 - Dsui_0294 0.28 -1.5 293,833 + Dsui_0294 0.28 -0.2 293,868 - Dsui_0294 0.30 -0.2 293,900 + Dsui_0294 0.32 +1.1 293,974 + -0.2 294,021 + Dsui_0294 0.40 +0.4 294,043 + +1.1 294,053 + Dsui_0294 0.43 +0.5 294,200 - +1.1 294,268 - Dsui_0294 0.57 -0.1 294,324 + Dsui_0294 0.61 -0.2 294,332 - +0.5 294,339 + Dsui_0294 0.62 -0.7 294,512 + Dsui_0294 0.73 +0.7 294,514 + Dsui_0294 0.73 +0.1 294,557 + Dsui_0294 0.76 +1.3 294,577 - Dsui_0294 0.77 +0.3 294,599 + Dsui_0294 0.79 +0.3 294,619 + Dsui_0294 0.80 +0.5 294,719 + Dsui_0294 0.87 -1.4 294,727 - +0.5 295,053 + -1.6 295,079 + -0.0 295,112 + -0.2 295,120 - +0.1 295,122 + -0.0 295,144 - +1.5 295,154 - +0.5 295,177 + +1.5 295,190 + -0.2 295,201 + +2.1 295,209 - +2.1 295,309 + +0.5 295,345 + Dsui_0295 0.15 +0.3 295,350 + Dsui_0295 0.15 -0.3 295,381 - +2.1 295,418 - +2.1 295,455 - +2.5 295,472 - Dsui_0295 0.19 -0.2 295,472 - Dsui_0295 0.19 -0.1 295,581 - +0.5 295,731 + +0.1 295,739 - Dsui_0295 0.29 -1.7 295,776 + Dsui_0295 0.30 -0.2 295,826 - +1.1 295,869 - Dsui_0295 0.33 -1.3 295,885 + Dsui_0295 0.34 +0.5 295,913 - +2.1
Or see this region's nucleotide sequence