Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0291 and Dsui_0292 are separated by 33 nucleotides Dsui_0292 and Dsui_0293 are separated by 61 nucleotides Dsui_0293 and Dsui_0294 are separated by 70 nucleotides
Dsui_0291: Dsui_0291 - tellurite resistance protein-like permease, at 290,206 to 291,273
_0291
Dsui_0292: Dsui_0292 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 291,307 to 292,698
_0292
Dsui_0293: Dsui_0293 - PilZ domain-containing protein, at 292,760 to 293,338
_0293
Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920
_0294
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1
2
3 at 290.307 kb on + strand at 290.317 kb on - strand, within Dsui_0291 at 290.325 kb on - strand, within Dsui_0291 at 290.339 kb on + strand, within Dsui_0291 at 290.368 kb on + strand, within Dsui_0291 at 290.411 kb on + strand, within Dsui_0291 at 290.449 kb on - strand, within Dsui_0291 at 290.498 kb on - strand, within Dsui_0291 at 290.604 kb on + strand, within Dsui_0291 at 290.671 kb on + strand at 290.755 kb on + strand, within Dsui_0291 at 290.841 kb on + strand, within Dsui_0291 at 290.963 kb on + strand, within Dsui_0291 at 291.024 kb on - strand, within Dsui_0291 at 291.024 kb on - strand, within Dsui_0291 at 291.090 kb on + strand at 291.090 kb on + strand at 291.098 kb on - strand, within Dsui_0291 at 291.189 kb on - strand at 291.194 kb on + strand at 291.202 kb on - strand at 291.205 kb on + strand at 291.208 kb on - strand at 291.214 kb on - strand at 291.214 kb on - strand at 291.360 kb on - strand at 291.771 kb on - strand, within Dsui_0292 at 291.791 kb on + strand, within Dsui_0292 at 291.858 kb on + strand at 291.878 kb on + strand at 291.995 kb on - strand, within Dsui_0292 at 292.013 kb on + strand, within Dsui_0292 at 292.065 kb on - strand at 292.065 kb on - strand, within Dsui_0292 at 292.065 kb on - strand, within Dsui_0292 at 292.118 kb on + strand, within Dsui_0292 at 292.118 kb on - strand at 292.470 kb on + strand at 292.912 kb on + strand at 292.929 kb on - strand, within Dsui_0293 at 292.965 kb on - strand, within Dsui_0293 at 292.966 kb on - strand, within Dsui_0293 at 293.014 kb on + strand, within Dsui_0293 at 293.144 kb on + strand, within Dsui_0293 at 293.209 kb on - strand, within Dsui_0293 at 293.251 kb on - strand, within Dsui_0293 at 293.269 kb on - strand, within Dsui_0293 at 293.343 kb on + strand at 293.519 kb on + strand at 293.591 kb on - strand, within Dsui_0294 at 293.633 kb on + strand, within Dsui_0294 at 293.687 kb on + strand, within Dsui_0294
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 290,307 + +1.4 290,317 - Dsui_0291 0.10 +0.6 290,325 - Dsui_0291 0.11 +0.8 290,339 + Dsui_0291 0.12 +0.4 290,368 + Dsui_0291 0.15 -1.0 290,411 + Dsui_0291 0.19 +0.4 290,449 - Dsui_0291 0.23 +0.2 290,498 - Dsui_0291 0.27 -0.4 290,604 + Dsui_0291 0.37 +0.2 290,671 + +0.5 290,755 + Dsui_0291 0.51 +0.9 290,841 + Dsui_0291 0.59 -1.0 290,963 + Dsui_0291 0.71 +0.5 291,024 - Dsui_0291 0.77 -0.1 291,024 - Dsui_0291 0.77 +0.6 291,090 + +1.1 291,090 + +0.1 291,098 - Dsui_0291 0.84 -0.5 291,189 - +0.6 291,194 + +0.0 291,202 - +0.1 291,205 + -0.8 291,208 - -0.1 291,214 - +0.8 291,214 - +0.2 291,360 - +0.4 291,771 - Dsui_0292 0.33 -0.1 291,791 + Dsui_0292 0.35 +0.5 291,858 + +3.1 291,878 + -0.7 291,995 - Dsui_0292 0.49 +0.3 292,013 + Dsui_0292 0.51 +1.4 292,065 - +1.7 292,065 - Dsui_0292 0.54 +1.1 292,065 - Dsui_0292 0.54 +0.5 292,118 + Dsui_0292 0.58 +1.5 292,118 - +2.7 292,470 + +1.1 292,912 + +1.1 292,929 - Dsui_0293 0.29 -0.0 292,965 - Dsui_0293 0.35 +1.1 292,966 - Dsui_0293 0.36 -0.4 293,014 + Dsui_0293 0.44 +0.9 293,144 + Dsui_0293 0.66 -0.9 293,209 - Dsui_0293 0.78 +0.4 293,251 - Dsui_0293 0.85 +0.4 293,269 - Dsui_0293 0.88 +0.0 293,343 + -0.3 293,519 + +1.4 293,591 - Dsui_0294 0.12 +2.7 293,633 + Dsui_0294 0.15 +0.3 293,687 + Dsui_0294 0.18 +0.1
Or see this region's nucleotide sequence