Strain Fitness in Dechlorosoma suillum PS around Dsui_0124

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0122 and Dsui_0123 are separated by 3 nucleotidesDsui_0123 and Dsui_0124 are separated by 9 nucleotidesDsui_0124 and Dsui_0125 are separated by 4 nucleotidesDsui_0125 and Dsui_0126 are separated by 108 nucleotides Dsui_0122: Dsui_0122 - D-tyrosyl-tRNA(Tyr) deacylase, at 120,494 to 120,964 _0122 Dsui_0123: Dsui_0123 - hypothetical protein, at 120,968 to 121,624 _0123 Dsui_0124: Dsui_0124 - lactate dehydrogenase-like oxidoreductase, at 121,634 to 122,602 _0124 Dsui_0125: Dsui_0125 - NAD-dependent aldehyde dehydrogenase, at 122,607 to 123,344 _0125 Dsui_0126: Dsui_0126 - (4Fe-4S) cluster-containing protein, at 123,453 to 124,892 _0126 Position (kb) 121 122 123Strain fitness (log2 ratio) -1 0 1 2 3at 120.714 kb on - strand, within Dsui_0122at 120.745 kb on + strandat 120.753 kb on - strand, within Dsui_0122at 120.889 kb on - strand, within Dsui_0122at 120.907 kb on + strandat 120.974 kb on - strandat 120.974 kb on - strandat 121.029 kb on - strandat 121.036 kb on - strand, within Dsui_0123at 121.052 kb on + strand, within Dsui_0123at 121.138 kb on - strand, within Dsui_0123at 121.149 kb on - strand, within Dsui_0123at 121.219 kb on + strand, within Dsui_0123at 121.219 kb on + strandat 121.219 kb on + strandat 121.250 kb on + strand, within Dsui_0123at 121.265 kb on + strandat 121.399 kb on - strand, within Dsui_0123at 121.445 kb on - strand, within Dsui_0123at 121.518 kb on - strand, within Dsui_0123at 121.683 kb on + strandat 121.683 kb on + strandat 121.691 kb on - strandat 121.710 kb on + strandat 121.736 kb on + strandat 121.737 kb on + strandat 121.783 kb on + strand, within Dsui_0124at 121.783 kb on + strandat 121.791 kb on - strand, within Dsui_0124at 121.842 kb on - strand, within Dsui_0124at 121.935 kb on - strand, within Dsui_0124at 121.935 kb on - strand, within Dsui_0124at 121.997 kb on + strand, within Dsui_0124at 122.005 kb on - strand, within Dsui_0124at 122.043 kb on + strandat 122.043 kb on - strand, within Dsui_0124at 122.065 kb on - strand, within Dsui_0124at 122.105 kb on + strand, within Dsui_0124at 122.126 kb on + strandat 122.139 kb on - strand, within Dsui_0124at 122.155 kb on + strand, within Dsui_0124at 122.155 kb on + strandat 122.156 kb on + strandat 122.217 kb on - strand, within Dsui_0124at 122.252 kb on + strand, within Dsui_0124at 122.281 kb on - strand, within Dsui_0124at 122.314 kb on - strand, within Dsui_0124at 122.315 kb on - strand, within Dsui_0124at 122.341 kb on - strand, within Dsui_0124at 122.359 kb on - strand, within Dsui_0124at 122.361 kb on + strand, within Dsui_0124at 122.449 kb on - strand, within Dsui_0124at 122.519 kb on - strandat 122.526 kb on + strandat 122.534 kb on - strandat 122.605 kb on + strandat 122.655 kb on - strandat 122.675 kb on - strandat 122.872 kb on - strand, within Dsui_0125at 122.896 kb on + strandat 123.218 kb on + strandat 123.241 kb on - strand, within Dsui_0125at 123.272 kb on - strandat 123.282 kb on - strandat 123.287 kb on - strandat 123.315 kb on + strandat 123.317 kb on - strandat 123.331 kb on + strandat 123.360 kb on - strandat 123.395 kb on - strandat 123.427 kb on + strandat 123.446 kb on - strandat 123.451 kb on + strandat 123.459 kb on - strandat 123.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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120,714 - Dsui_0122 0.47 +0.3
120,745 + -0.2
120,753 - Dsui_0122 0.55 +0.2
120,889 - Dsui_0122 0.84 +1.3
120,907 + -0.2
120,974 - -0.1
120,974 - +0.1
121,029 - -0.4
121,036 - Dsui_0123 0.10 -0.1
121,052 + Dsui_0123 0.13 -0.8
121,138 - Dsui_0123 0.26 +0.1
121,149 - Dsui_0123 0.28 +0.1
121,219 + Dsui_0123 0.38 -0.2
121,219 + +2.2
121,219 + +2.2
121,250 + Dsui_0123 0.43 -0.4
121,265 + +1.2
121,399 - Dsui_0123 0.66 -0.4
121,445 - Dsui_0123 0.73 +2.2
121,518 - Dsui_0123 0.84 -0.6
121,683 + -0.5
121,683 + +0.6
121,691 - +1.2
121,710 + +1.2
121,736 + +0.6
121,737 + +1.2
121,783 + Dsui_0124 0.15 -0.8
121,783 + +2.2
121,791 - Dsui_0124 0.16 +0.1
121,842 - Dsui_0124 0.21 -0.1
121,935 - Dsui_0124 0.31 -0.6
121,935 - Dsui_0124 0.31 -0.2
121,997 + Dsui_0124 0.37 -0.0
122,005 - Dsui_0124 0.38 +0.1
122,043 + +0.2
122,043 - Dsui_0124 0.42 +0.1
122,065 - Dsui_0124 0.44 -0.0
122,105 + Dsui_0124 0.49 +0.9
122,126 + +0.6
122,139 - Dsui_0124 0.52 +0.4
122,155 + Dsui_0124 0.54 +1.0
122,155 + +2.7
122,156 + +3.2
122,217 - Dsui_0124 0.60 -0.5
122,252 + Dsui_0124 0.64 +1.2
122,281 - Dsui_0124 0.67 -0.1
122,314 - Dsui_0124 0.70 +0.0
122,315 - Dsui_0124 0.70 +0.4
122,341 - Dsui_0124 0.73 +0.8
122,359 - Dsui_0124 0.75 -0.7
122,361 + Dsui_0124 0.75 +0.6
122,449 - Dsui_0124 0.84 +0.1
122,519 - -0.3
122,526 + +0.8
122,534 - +2.2
122,605 + +0.6
122,655 - +0.2
122,675 - -1.0
122,872 - Dsui_0125 0.36 -0.2
122,896 + +0.6
123,218 + +1.2
123,241 - Dsui_0125 0.86 +0.7
123,272 - +0.4
123,282 - +1.6
123,287 - +0.5
123,315 + +2.2
123,317 - +0.7
123,331 + +1.4
123,360 - +0.3
123,395 - +0.8
123,427 + +2.2
123,446 - +0.8
123,451 + +0.2
123,459 - +0.5
123,493 + -0.6

Or see this region's nucleotide sequence