Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0934

Experiment: MoYLS4 with G418 0.031 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0932 and DvMF_0933 are separated by 2 nucleotidesDvMF_0933 and DvMF_0934 are separated by 103 nucleotidesDvMF_0934 and DvMF_0935 are separated by 98 nucleotides DvMF_0932: DvMF_0932 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,131,176 to 1,131,763 _0932 DvMF_0933: DvMF_0933 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 1,131,766 to 1,132,599 _0933 DvMF_0934: DvMF_0934 - Tetratricopeptide domain protein (RefSeq), at 1,132,703 to 1,133,608 _0934 DvMF_0935: DvMF_0935 - glycoside hydrolase family 57 (RefSeq), at 1,133,707 to 1,136,172 _0935 Position (kb) 1132 1133 1134Strain fitness (log2 ratio) -1 0 1at 1131.756 kb on + strandat 1131.760 kb on - strandat 1131.793 kb on - strandat 1131.835 kb on - strandat 1132.115 kb on + strand, within DvMF_0933at 1132.178 kb on + strand, within DvMF_0933at 1132.178 kb on + strand, within DvMF_0933at 1132.423 kb on + strand, within DvMF_0933at 1132.431 kb on - strand, within DvMF_0933at 1132.510 kb on - strand, within DvMF_0933at 1132.589 kb on + strandat 1132.605 kb on + strandat 1132.694 kb on - strandat 1132.832 kb on + strand, within DvMF_0934at 1132.849 kb on + strand, within DvMF_0934at 1133.067 kb on - strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.119 kb on - strand, within DvMF_0934at 1133.135 kb on + strand, within DvMF_0934at 1133.608 kb on - strandat 1133.608 kb on - strandat 1133.676 kb on + strandat 1133.948 kb on + strandat 1133.989 kb on - strand, within DvMF_0935at 1134.027 kb on - strand, within DvMF_0935at 1134.051 kb on - strand, within DvMF_0935at 1134.090 kb on + strand, within DvMF_0935at 1134.276 kb on + strand, within DvMF_0935at 1134.284 kb on - strand, within DvMF_0935at 1134.335 kb on - strand, within DvMF_0935

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.031 mg/ml
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1,131,756 + -0.2
1,131,760 - -0.5
1,131,793 - -0.4
1,131,835 - -0.2
1,132,115 + DvMF_0933 0.42 -0.0
1,132,178 + DvMF_0933 0.49 -0.3
1,132,178 + DvMF_0933 0.49 -0.3
1,132,423 + DvMF_0933 0.79 +0.0
1,132,431 - DvMF_0933 0.80 -0.3
1,132,510 - DvMF_0933 0.89 -0.3
1,132,589 + -0.4
1,132,605 + -1.3
1,132,694 - -0.1
1,132,832 + DvMF_0934 0.14 -0.7
1,132,849 + DvMF_0934 0.16 -0.5
1,133,067 - DvMF_0934 0.40 -0.6
1,133,111 + DvMF_0934 0.45 -0.3
1,133,111 + DvMF_0934 0.45 -0.7
1,133,111 + DvMF_0934 0.45 -0.2
1,133,111 + DvMF_0934 0.45 -0.7
1,133,111 + DvMF_0934 0.45 -0.2
1,133,119 - DvMF_0934 0.46 -0.4
1,133,135 + DvMF_0934 0.48 -0.4
1,133,608 - -0.2
1,133,608 - -0.4
1,133,676 + +0.1
1,133,948 + -0.5
1,133,989 - DvMF_0935 0.11 -0.6
1,134,027 - DvMF_0935 0.13 -0.5
1,134,051 - DvMF_0935 0.14 +0.2
1,134,090 + DvMF_0935 0.16 +0.5
1,134,276 + DvMF_0935 0.23 -0.3
1,134,284 - DvMF_0935 0.23 -0.2
1,134,335 - DvMF_0935 0.25 -0.3

Or see this region's nucleotide sequence