Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4108

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4106 and Shewana3_4107 overlap by 4 nucleotidesShewana3_4107 and Shewana3_4108 are separated by 76 nucleotidesShewana3_4108 and Shewana3_4109 are separated by 385 nucleotides Shewana3_4106: Shewana3_4106 - rhodanese domain-containing protein (RefSeq), at 4,929,052 to 4,929,357 _4106 Shewana3_4107: Shewana3_4107 - rhomboid family protein (RefSeq), at 4,929,354 to 4,930,196 _4107 Shewana3_4108: Shewana3_4108 - isoprenoid biosynthesis protein with amidotransferase-like domain (RefSeq), at 4,930,273 to 4,930,929 _4108 Shewana3_4109: Shewana3_4109 - DNA polymerase I (RefSeq), at 4,931,315 to 4,934,083 _4109 Position (kb) 4930 4931Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 4929.309 kb on + strand, within Shewana3_4106at 4929.390 kb on + strandat 4929.417 kb on + strandat 4929.418 kb on - strandat 4929.577 kb on + strand, within Shewana3_4107at 4929.710 kb on - strand, within Shewana3_4107at 4929.787 kb on + strand, within Shewana3_4107at 4929.811 kb on - strand, within Shewana3_4107at 4930.004 kb on + strand, within Shewana3_4107at 4930.012 kb on - strand, within Shewana3_4107at 4930.191 kb on + strandat 4930.233 kb on + strandat 4930.239 kb on + strandat 4930.246 kb on + strandat 4930.248 kb on - strandat 4930.267 kb on - strandat 4930.347 kb on + strand, within Shewana3_4108at 4930.397 kb on - strand, within Shewana3_4108at 4930.397 kb on - strand, within Shewana3_4108at 4930.404 kb on - strand, within Shewana3_4108at 4930.414 kb on - strand, within Shewana3_4108at 4930.443 kb on - strand, within Shewana3_4108at 4930.477 kb on - strand, within Shewana3_4108at 4930.652 kb on + strand, within Shewana3_4108at 4930.652 kb on + strand, within Shewana3_4108at 4930.653 kb on + strand, within Shewana3_4108at 4930.722 kb on - strand, within Shewana3_4108at 4931.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,929,309 + Shewana3_4106 0.84 -0.9
4,929,390 + +0.4
4,929,417 + -1.0
4,929,418 - +0.6
4,929,577 + Shewana3_4107 0.26 -0.3
4,929,710 - Shewana3_4107 0.42 +0.1
4,929,787 + Shewana3_4107 0.51 -0.6
4,929,811 - Shewana3_4107 0.54 +0.6
4,930,004 + Shewana3_4107 0.77 +3.6
4,930,012 - Shewana3_4107 0.78 -0.3
4,930,191 + +0.1
4,930,233 + +0.5
4,930,239 + -0.7
4,930,246 + -0.4
4,930,248 - -6.2
4,930,267 - -1.7
4,930,347 + Shewana3_4108 0.11 -0.8
4,930,397 - Shewana3_4108 0.19 -1.1
4,930,397 - Shewana3_4108 0.19 -0.1
4,930,404 - Shewana3_4108 0.20 -1.0
4,930,414 - Shewana3_4108 0.21 +0.2
4,930,443 - Shewana3_4108 0.26 -0.8
4,930,477 - Shewana3_4108 0.31 +0.2
4,930,652 + Shewana3_4108 0.58 +0.1
4,930,652 + Shewana3_4108 0.58 -1.5
4,930,653 + Shewana3_4108 0.58 +0.1
4,930,722 - Shewana3_4108 0.68 -0.6
4,931,219 + -1.1

Or see this region's nucleotide sequence