Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4106 and Shewana3_4107 overlap by 4 nucleotides Shewana3_4107 and Shewana3_4108 are separated by 76 nucleotides Shewana3_4108 and Shewana3_4109 are separated by 385 nucleotides
Shewana3_4106: Shewana3_4106 - rhodanese domain-containing protein (RefSeq), at 4,929,052 to 4,929,357
_4106
Shewana3_4107: Shewana3_4107 - rhomboid family protein (RefSeq), at 4,929,354 to 4,930,196
_4107
Shewana3_4108: Shewana3_4108 - isoprenoid biosynthesis protein with amidotransferase-like domain (RefSeq), at 4,930,273 to 4,930,929
_4108
Shewana3_4109: Shewana3_4109 - DNA polymerase I (RefSeq), at 4,931,315 to 4,934,083
_4109
Position (kb)
4930
4931 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 4929.309 kb on + strand, within Shewana3_4106 at 4929.390 kb on + strand at 4929.417 kb on + strand at 4929.418 kb on - strand at 4929.577 kb on + strand, within Shewana3_4107 at 4929.710 kb on - strand, within Shewana3_4107 at 4929.787 kb on + strand, within Shewana3_4107 at 4929.811 kb on - strand, within Shewana3_4107 at 4930.004 kb on + strand, within Shewana3_4107 at 4930.012 kb on - strand, within Shewana3_4107 at 4930.191 kb on + strand at 4930.233 kb on + strand at 4930.239 kb on + strand at 4930.246 kb on + strand at 4930.248 kb on - strand at 4930.267 kb on - strand at 4930.347 kb on + strand, within Shewana3_4108 at 4930.397 kb on - strand, within Shewana3_4108 at 4930.397 kb on - strand, within Shewana3_4108 at 4930.404 kb on - strand, within Shewana3_4108 at 4930.414 kb on - strand, within Shewana3_4108 at 4930.443 kb on - strand, within Shewana3_4108 at 4930.477 kb on - strand, within Shewana3_4108 at 4930.652 kb on + strand, within Shewana3_4108 at 4930.652 kb on + strand, within Shewana3_4108 at 4930.653 kb on + strand, within Shewana3_4108 at 4930.722 kb on - strand, within Shewana3_4108 at 4931.219 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,929,309 + Shewana3_4106 0.84 -0.9 4,929,390 + +0.4 4,929,417 + -1.0 4,929,418 - +0.6 4,929,577 + Shewana3_4107 0.26 -0.3 4,929,710 - Shewana3_4107 0.42 +0.1 4,929,787 + Shewana3_4107 0.51 -0.6 4,929,811 - Shewana3_4107 0.54 +0.6 4,930,004 + Shewana3_4107 0.77 +3.6 4,930,012 - Shewana3_4107 0.78 -0.3 4,930,191 + +0.1 4,930,233 + +0.5 4,930,239 + -0.7 4,930,246 + -0.4 4,930,248 - -6.2 4,930,267 - -1.7 4,930,347 + Shewana3_4108 0.11 -0.8 4,930,397 - Shewana3_4108 0.19 -1.1 4,930,397 - Shewana3_4108 0.19 -0.1 4,930,404 - Shewana3_4108 0.20 -1.0 4,930,414 - Shewana3_4108 0.21 +0.2 4,930,443 - Shewana3_4108 0.26 -0.8 4,930,477 - Shewana3_4108 0.31 +0.2 4,930,652 + Shewana3_4108 0.58 +0.1 4,930,652 + Shewana3_4108 0.58 -1.5 4,930,653 + Shewana3_4108 0.58 +0.1 4,930,722 - Shewana3_4108 0.68 -0.6 4,931,219 + -1.1
Or see this region's nucleotide sequence