Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3881

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3880 and Shewana3_3881 overlap by 4 nucleotidesShewana3_3881 and Shewana3_3882 are separated by 106 nucleotidesShewana3_3882 and Shewana3_3883 overlap by 4 nucleotides Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179 _3880 Shewana3_3881: Shewana3_3881 - hypothetical protein (RefSeq), at 4,662,176 to 4,662,502 _3881 Shewana3_3882: Shewana3_3882 - phosphoheptose isomerase (RefSeq), at 4,662,609 to 4,663,202 _3882 Shewana3_3883: Shewana3_3883 - transport-associated (RefSeq), at 4,663,199 to 4,663,765 _3883 Position (kb) 4662 4663Strain fitness (log2 ratio) -1 0 1 2 3 4at 4661.821 kb on + strand, within Shewana3_3880at 4661.848 kb on + strand, within Shewana3_3880at 4662.230 kb on + strand, within Shewana3_3881at 4662.238 kb on - strand, within Shewana3_3881at 4662.382 kb on - strand, within Shewana3_3881at 4662.629 kb on - strandat 4662.666 kb on + strandat 4662.677 kb on + strand, within Shewana3_3882at 4662.782 kb on + strand, within Shewana3_3882at 4662.845 kb on + strand, within Shewana3_3882at 4663.002 kb on + strand, within Shewana3_3882at 4663.037 kb on - strand, within Shewana3_3882at 4663.099 kb on + strand, within Shewana3_3882at 4663.201 kb on + strandat 4663.226 kb on - strandat 4663.424 kb on + strand, within Shewana3_3883at 4663.436 kb on + strand, within Shewana3_3883

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,661,821 + Shewana3_3880 0.81 -1.4
4,661,848 + Shewana3_3880 0.82 +1.5
4,662,230 + Shewana3_3881 0.17 -0.1
4,662,238 - Shewana3_3881 0.19 -0.7
4,662,382 - Shewana3_3881 0.63 -1.0
4,662,629 - +2.5
4,662,666 + +1.4
4,662,677 + Shewana3_3882 0.11 +1.8
4,662,782 + Shewana3_3882 0.29 -0.2
4,662,845 + Shewana3_3882 0.40 +2.0
4,663,002 + Shewana3_3882 0.66 +3.1
4,663,037 - Shewana3_3882 0.72 +4.0
4,663,099 + Shewana3_3882 0.82 +2.0
4,663,201 + +0.6
4,663,226 - +0.2
4,663,424 + Shewana3_3883 0.40 +1.6
4,663,436 + Shewana3_3883 0.42 +0.8

Or see this region's nucleotide sequence