Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3546

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3545 and Shewana3_3546 are separated by 267 nucleotidesShewana3_3546 and Shewana3_3547 are separated by 95 nucleotides Shewana3_3545: Shewana3_3545 - hypothetical protein (RefSeq), at 4,247,736 to 4,252,655 _3545 Shewana3_3546: Shewana3_3546 - hypothetical protein (RefSeq), at 4,252,923 to 4,253,276 _3546 Shewana3_3547: Shewana3_3547 - ABC transporter related (RefSeq), at 4,253,372 to 4,254,862 _3547 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4252.281 kb on - strandat 4252.398 kb on - strandat 4252.475 kb on - strandat 4252.587 kb on - strandat 4252.616 kb on - strandat 4252.839 kb on - strandat 4252.938 kb on - strandat 4253.101 kb on - strand, within Shewana3_3546at 4253.270 kb on + strandat 4253.382 kb on + strandat 4253.530 kb on + strand, within Shewana3_3547at 4253.606 kb on + strand, within Shewana3_3547at 4253.718 kb on - strand, within Shewana3_3547at 4253.804 kb on + strand, within Shewana3_3547at 4253.912 kb on - strand, within Shewana3_3547at 4253.949 kb on - strand, within Shewana3_3547at 4253.960 kb on + strand, within Shewana3_3547at 4253.984 kb on + strand, within Shewana3_3547at 4254.029 kb on + strand, within Shewana3_3547at 4254.172 kb on + strand, within Shewana3_3547at 4254.180 kb on - strand, within Shewana3_3547at 4254.192 kb on - strand, within Shewana3_3547at 4254.243 kb on + strand, within Shewana3_3547at 4254.262 kb on + strand, within Shewana3_3547

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,252,281 - -0.5
4,252,398 - +1.4
4,252,475 - -1.1
4,252,587 - +3.2
4,252,616 - +0.4
4,252,839 - -1.8
4,252,938 - +0.2
4,253,101 - Shewana3_3546 0.50 +1.2
4,253,270 + -0.4
4,253,382 + -0.2
4,253,530 + Shewana3_3547 0.11 +0.0
4,253,606 + Shewana3_3547 0.16 -0.4
4,253,718 - Shewana3_3547 0.23 -0.9
4,253,804 + Shewana3_3547 0.29 +0.2
4,253,912 - Shewana3_3547 0.36 -1.0
4,253,949 - Shewana3_3547 0.39 -0.2
4,253,960 + Shewana3_3547 0.39 -0.0
4,253,984 + Shewana3_3547 0.41 -0.7
4,254,029 + Shewana3_3547 0.44 -0.1
4,254,172 + Shewana3_3547 0.54 +0.2
4,254,180 - Shewana3_3547 0.54 -1.5
4,254,192 - Shewana3_3547 0.55 +0.0
4,254,243 + Shewana3_3547 0.58 +2.1
4,254,262 + Shewana3_3547 0.60 -1.4

Or see this region's nucleotide sequence