Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3543 and Shewana3_3544 are separated by 85 nucleotides Shewana3_3544 and Shewana3_3545 are separated by 104 nucleotides
Shewana3_3543: Shewana3_3543 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 4,244,988 to 4,246,967
_3543
Shewana3_3544: Shewana3_3544 - cold-shock DNA-binding protein family protein (RefSeq), at 4,247,053 to 4,247,631
_3544
Shewana3_3545: Shewana3_3545 - hypothetical protein (RefSeq), at 4,247,736 to 4,252,655
_3545
Position (kb) 4247
4248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4246.157 kb on + strand, within Shewana3_3543 at 4246.370 kb on + strand, within Shewana3_3543 at 4246.370 kb on + strand, within Shewana3_3543 at 4246.393 kb on - strand, within Shewana3_3543 at 4246.491 kb on - strand, within Shewana3_3543 at 4246.613 kb on + strand, within Shewana3_3543 at 4246.621 kb on - strand, within Shewana3_3543 at 4246.721 kb on + strand, within Shewana3_3543 at 4246.879 kb on - strand at 4247.006 kb on - strand at 4247.006 kb on - strand at 4247.050 kb on - strand at 4247.129 kb on - strand, within Shewana3_3544 at 4247.171 kb on + strand, within Shewana3_3544 at 4247.324 kb on + strand, within Shewana3_3544 at 4247.448 kb on + strand, within Shewana3_3544 at 4247.490 kb on - strand, within Shewana3_3544 at 4247.772 kb on - strand at 4247.786 kb on - strand at 4247.915 kb on + strand at 4248.073 kb on - strand at 4248.108 kb on + strand at 4248.182 kb on + strand at 4248.334 kb on - strand, within Shewana3_3545 at 4248.443 kb on + strand, within Shewana3_3545 at 4248.595 kb on + strand, within Shewana3_3545 at 4248.618 kb on + strand, within Shewana3_3545 at 4248.626 kb on - strand, within Shewana3_3545 at 4248.626 kb on - strand, within Shewana3_3545
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,246,157 + Shewana3_3543 0.59 -0.5 4,246,370 + Shewana3_3543 0.70 +0.5 4,246,370 + Shewana3_3543 0.70 -0.2 4,246,393 - Shewana3_3543 0.71 -0.8 4,246,491 - Shewana3_3543 0.76 +0.4 4,246,613 + Shewana3_3543 0.82 +1.4 4,246,621 - Shewana3_3543 0.82 +1.0 4,246,721 + Shewana3_3543 0.88 +0.1 4,246,879 - -0.4 4,247,006 - -2.1 4,247,006 - -2.7 4,247,050 - +0.1 4,247,129 - Shewana3_3544 0.13 -0.4 4,247,171 + Shewana3_3544 0.20 +2.2 4,247,324 + Shewana3_3544 0.47 -1.6 4,247,448 + Shewana3_3544 0.68 +0.6 4,247,490 - Shewana3_3544 0.75 +2.6 4,247,772 - +0.7 4,247,786 - -0.4 4,247,915 + -0.3 4,248,073 - +1.1 4,248,108 + +0.3 4,248,182 + +0.2 4,248,334 - Shewana3_3545 0.12 -0.3 4,248,443 + Shewana3_3545 0.14 +0.3 4,248,595 + Shewana3_3545 0.17 -1.0 4,248,618 + Shewana3_3545 0.18 +0.0 4,248,626 - Shewana3_3545 0.18 +0.9 4,248,626 - Shewana3_3545 0.18 -1.4
Or see this region's nucleotide sequence