Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3311 and Shewana3_3312 are separated by 129 nucleotides Shewana3_3312 and Shewana3_3313 are separated by 226 nucleotides Shewana3_3313 and Shewana3_3314 are separated by 98 nucleotides Shewana3_3314 and Shewana3_3315 are separated by 130 nucleotides Shewana3_3315 and Shewana3_3316 are separated by 60 nucleotides
Shewana3_3311: Shewana3_3311 - MarR family transcriptional regulator (RefSeq), at 3,973,671 to 3,974,168
_3311
Shewana3_3312: Shewana3_3312 - OsmC family protein (RefSeq), at 3,974,298 to 3,974,723
_3312
Shewana3_3313: Shewana3_3313 - hypothetical protein (RefSeq), at 3,974,950 to 3,976,374
_3313
Shewana3_3314: Shewana3_3314 - hypothetical protein (RefSeq), at 3,976,473 to 3,976,658
_3314
Shewana3_3315: Shewana3_3315 - hypothetical protein (RefSeq), at 3,976,789 to 3,977,079
_3315
Shewana3_3316: Shewana3_3316 - methyltransferase type 12 (RefSeq), at 3,977,140 to 3,977,664
_3316
Position (kb)
3974
3975
3976
3977 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3974.097 kb on + strand, within Shewana3_3311 at 3974.172 kb on - strand at 3974.428 kb on + strand, within Shewana3_3312 at 3974.478 kb on + strand, within Shewana3_3312 at 3974.478 kb on + strand, within Shewana3_3312 at 3974.604 kb on - strand, within Shewana3_3312 at 3974.651 kb on - strand, within Shewana3_3312 at 3974.686 kb on + strand at 3974.720 kb on - strand at 3974.801 kb on + strand at 3974.979 kb on + strand at 3974.987 kb on - strand at 3974.987 kb on - strand at 3975.001 kb on + strand at 3975.146 kb on - strand, within Shewana3_3313 at 3975.251 kb on - strand, within Shewana3_3313 at 3975.354 kb on + strand, within Shewana3_3313 at 3975.515 kb on - strand, within Shewana3_3313 at 3975.817 kb on + strand, within Shewana3_3313 at 3975.874 kb on + strand, within Shewana3_3313 at 3975.944 kb on - strand, within Shewana3_3313 at 3975.958 kb on - strand, within Shewana3_3313 at 3976.019 kb on - strand, within Shewana3_3313 at 3976.271 kb on + strand at 3976.271 kb on + strand at 3976.271 kb on + strand at 3976.279 kb on - strand at 3976.302 kb on - strand at 3976.304 kb on + strand at 3976.312 kb on - strand at 3976.477 kb on + strand at 3976.815 kb on + strand at 3976.903 kb on - strand, within Shewana3_3315 at 3977.086 kb on + strand at 3977.115 kb on - strand at 3977.262 kb on - strand, within Shewana3_3316
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,974,097 + Shewana3_3311 0.86 -1.6 3,974,172 - -0.2 3,974,428 + Shewana3_3312 0.31 +0.1 3,974,478 + Shewana3_3312 0.42 +0.5 3,974,478 + Shewana3_3312 0.42 -0.6 3,974,604 - Shewana3_3312 0.72 -0.4 3,974,651 - Shewana3_3312 0.83 -0.9 3,974,686 + -0.4 3,974,720 - -2.1 3,974,801 + -0.0 3,974,979 + -1.4 3,974,987 - -0.6 3,974,987 - +1.4 3,975,001 + -0.7 3,975,146 - Shewana3_3313 0.14 -3.5 3,975,251 - Shewana3_3313 0.21 -0.2 3,975,354 + Shewana3_3313 0.28 +0.2 3,975,515 - Shewana3_3313 0.40 -0.2 3,975,817 + Shewana3_3313 0.61 -1.5 3,975,874 + Shewana3_3313 0.65 +0.8 3,975,944 - Shewana3_3313 0.70 -0.4 3,975,958 - Shewana3_3313 0.71 -0.9 3,976,019 - Shewana3_3313 0.75 -2.1 3,976,271 + +0.8 3,976,271 + +0.4 3,976,271 + +0.7 3,976,279 - -0.7 3,976,302 - +0.2 3,976,304 + -0.8 3,976,312 - -1.4 3,976,477 + -0.1 3,976,815 + +0.1 3,976,903 - Shewana3_3315 0.39 -0.7 3,977,086 + +0.9 3,977,115 - +0.6 3,977,262 - Shewana3_3316 0.23 +0.1
Or see this region's nucleotide sequence