Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3194

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3193 and Shewana3_3194 are separated by 1 nucleotidesShewana3_3194 and Shewana3_3195 are separated by 500 nucleotides Shewana3_3193: Shewana3_3193 - secretion protein HlyD family protein (RefSeq), at 3,831,240 to 3,832,385 _3193 Shewana3_3194: Shewana3_3194 - hypothetical protein (RefSeq), at 3,832,387 to 3,832,803 _3194 Shewana3_3195: Shewana3_3195 - hypothetical protein (RefSeq), at 3,833,304 to 3,833,759 _3195 Position (kb) 3832 3833Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 3831.459 kb on - strand, within Shewana3_3193at 3831.550 kb on - strand, within Shewana3_3193at 3831.654 kb on - strand, within Shewana3_3193at 3831.738 kb on - strand, within Shewana3_3193at 3831.764 kb on - strand, within Shewana3_3193at 3831.834 kb on - strand, within Shewana3_3193at 3831.849 kb on - strand, within Shewana3_3193at 3831.990 kb on + strand, within Shewana3_3193at 3832.092 kb on - strand, within Shewana3_3193at 3832.094 kb on + strand, within Shewana3_3193at 3832.301 kb on - strandat 3832.512 kb on - strand, within Shewana3_3194at 3832.677 kb on - strand, within Shewana3_3194at 3832.897 kb on + strandat 3832.915 kb on - strandat 3833.091 kb on + strandat 3833.092 kb on + strandat 3833.122 kb on + strandat 3833.130 kb on - strandat 3833.257 kb on + strandat 3833.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,831,459 - Shewana3_3193 0.19 +1.8
3,831,550 - Shewana3_3193 0.27 -1.0
3,831,654 - Shewana3_3193 0.36 -0.1
3,831,738 - Shewana3_3193 0.43 +1.1
3,831,764 - Shewana3_3193 0.46 +1.9
3,831,834 - Shewana3_3193 0.52 +0.7
3,831,849 - Shewana3_3193 0.53 +0.1
3,831,990 + Shewana3_3193 0.65 -0.6
3,832,092 - Shewana3_3193 0.74 +6.3
3,832,094 + Shewana3_3193 0.75 +0.5
3,832,301 - -0.4
3,832,512 - Shewana3_3194 0.30 +0.6
3,832,677 - Shewana3_3194 0.70 +1.3
3,832,897 + -0.8
3,832,915 - +0.2
3,833,091 + -1.1
3,833,092 + +0.7
3,833,122 + -0.4
3,833,130 - +0.5
3,833,257 + +0.6
3,833,257 + +0.2

Or see this region's nucleotide sequence