Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3070 and Shewana3_3071 are separated by 27 nucleotides Shewana3_3071 and Shewana3_3072 are separated by 86 nucleotides Shewana3_3072 and Shewana3_3073 are separated by 470 nucleotides
Shewana3_3070: Shewana3_3070 - aspartate carbamoyltransferase (RefSeq), at 3,682,211 to 3,683,230
_3070
Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550
_3071
Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834
_3072
Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615
_3073
Position (kb) 3683
3684
3685 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 3682.334 kb on - strand, within Shewana3_3070 at 3682.379 kb on + strand, within Shewana3_3070 at 3682.394 kb on + strand, within Shewana3_3070 at 3682.576 kb on - strand, within Shewana3_3070 at 3682.658 kb on + strand, within Shewana3_3070 at 3682.809 kb on + strand, within Shewana3_3070 at 3683.020 kb on + strand, within Shewana3_3070 at 3683.063 kb on + strand, within Shewana3_3070 at 3684.557 kb on + strand at 3684.732 kb on + strand, within Shewana3_3072 at 3685.280 kb on - strand at 3685.501 kb on - strand, within Shewana3_3073
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,682,334 - Shewana3_3070 0.12 -2.2 3,682,379 + Shewana3_3070 0.16 -3.0 3,682,394 + Shewana3_3070 0.18 -5.8 3,682,576 - Shewana3_3070 0.36 -5.2 3,682,658 + Shewana3_3070 0.44 -2.2 3,682,809 + Shewana3_3070 0.59 -3.5 3,683,020 + Shewana3_3070 0.79 -4.6 3,683,063 + Shewana3_3070 0.84 -1.8 3,684,557 + -2.1 3,684,732 + Shewana3_3072 0.48 +1.5 3,685,280 - +2.3 3,685,501 - Shewana3_3073 0.15 +4.4
Or see this region's nucleotide sequence