Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3047

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3046 and Shewana3_3047 are separated by 218 nucleotidesShewana3_3047 and Shewana3_3048 are separated by 185 nucleotides Shewana3_3046: Shewana3_3046 - LysR family transcriptional regulator (RefSeq), at 3,651,019 to 3,651,930 _3046 Shewana3_3047: Shewana3_3047 - Hpt protein (RefSeq), at 3,652,149 to 3,652,514 _3047 Shewana3_3048: Shewana3_3048 - putative radical SAM protein (RefSeq), at 3,652,700 to 3,653,629 _3048 Position (kb) 3652 3653Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3651.252 kb on - strand, within Shewana3_3046at 3651.314 kb on + strand, within Shewana3_3046at 3651.325 kb on - strand, within Shewana3_3046at 3651.516 kb on - strand, within Shewana3_3046at 3652.020 kb on - strandat 3652.061 kb on - strandat 3652.142 kb on + strandat 3652.161 kb on - strandat 3652.161 kb on - strandat 3652.161 kb on - strandat 3652.521 kb on - strandat 3652.523 kb on + strandat 3652.531 kb on - strandat 3652.531 kb on - strandat 3652.531 kb on - strandat 3652.590 kb on - strandat 3652.709 kb on + strandat 3652.709 kb on + strandat 3652.726 kb on + strandat 3652.868 kb on - strand, within Shewana3_3048at 3652.894 kb on + strand, within Shewana3_3048at 3652.902 kb on - strand, within Shewana3_3048at 3652.902 kb on - strand, within Shewana3_3048at 3652.909 kb on + strand, within Shewana3_3048at 3652.912 kb on - strand, within Shewana3_3048at 3652.912 kb on - strand, within Shewana3_3048at 3652.957 kb on - strand, within Shewana3_3048at 3652.983 kb on - strand, within Shewana3_3048at 3653.059 kb on - strand, within Shewana3_3048at 3653.082 kb on - strand, within Shewana3_3048at 3653.144 kb on - strand, within Shewana3_3048at 3653.154 kb on + strand, within Shewana3_3048at 3653.343 kb on - strand, within Shewana3_3048at 3653.414 kb on + strand, within Shewana3_3048at 3653.445 kb on - strand, within Shewana3_3048

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,651,252 - Shewana3_3046 0.26 +2.3
3,651,314 + Shewana3_3046 0.32 +3.8
3,651,325 - Shewana3_3046 0.34 +1.4
3,651,516 - Shewana3_3046 0.54 +2.4
3,652,020 - +1.9
3,652,061 - -2.8
3,652,142 + +0.3
3,652,161 - +0.6
3,652,161 - +0.2
3,652,161 - -0.5
3,652,521 - +1.9
3,652,523 + +4.2
3,652,531 - -0.3
3,652,531 - +1.6
3,652,531 - +0.4
3,652,590 - +0.1
3,652,709 + +0.5
3,652,709 + +1.8
3,652,726 + -0.7
3,652,868 - Shewana3_3048 0.18 +0.1
3,652,894 + Shewana3_3048 0.21 +0.1
3,652,902 - Shewana3_3048 0.22 -0.5
3,652,902 - Shewana3_3048 0.22 +0.5
3,652,909 + Shewana3_3048 0.22 +0.8
3,652,912 - Shewana3_3048 0.23 +0.7
3,652,912 - Shewana3_3048 0.23 +0.6
3,652,957 - Shewana3_3048 0.28 +1.0
3,652,983 - Shewana3_3048 0.30 +1.1
3,653,059 - Shewana3_3048 0.39 +0.9
3,653,082 - Shewana3_3048 0.41 -1.0
3,653,144 - Shewana3_3048 0.48 +0.5
3,653,154 + Shewana3_3048 0.49 -0.2
3,653,343 - Shewana3_3048 0.69 +2.2
3,653,414 + Shewana3_3048 0.77 +0.4
3,653,445 - Shewana3_3048 0.80 +1.1

Or see this region's nucleotide sequence