Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3045 and Shewana3_3046 are separated by 27 nucleotides Shewana3_3046 and Shewana3_3047 are separated by 218 nucleotides Shewana3_3047 and Shewana3_3048 are separated by 185 nucleotides
Shewana3_3045: Shewana3_3045 - adenylate cyclase-related protein (RefSeq), at 3,649,984 to 3,650,991
_3045
Shewana3_3046: Shewana3_3046 - LysR family transcriptional regulator (RefSeq), at 3,651,019 to 3,651,930
_3046
Shewana3_3047: Shewana3_3047 - Hpt protein (RefSeq), at 3,652,149 to 3,652,514
_3047
Shewana3_3048: Shewana3_3048 - putative radical SAM protein (RefSeq), at 3,652,700 to 3,653,629
_3048
Position (kb)
3651
3652 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3650.223 kb on + strand, within Shewana3_3045 at 3650.344 kb on + strand, within Shewana3_3045 at 3650.345 kb on + strand, within Shewana3_3045 at 3650.441 kb on + strand, within Shewana3_3045 at 3650.761 kb on + strand, within Shewana3_3045 at 3650.838 kb on + strand, within Shewana3_3045 at 3650.838 kb on + strand, within Shewana3_3045 at 3650.922 kb on - strand at 3651.252 kb on - strand, within Shewana3_3046 at 3651.314 kb on + strand, within Shewana3_3046 at 3651.325 kb on - strand, within Shewana3_3046 at 3651.516 kb on - strand, within Shewana3_3046 at 3652.020 kb on - strand at 3652.061 kb on - strand at 3652.142 kb on + strand at 3652.161 kb on - strand at 3652.161 kb on - strand at 3652.161 kb on - strand at 3652.521 kb on - strand at 3652.523 kb on + strand at 3652.531 kb on - strand at 3652.531 kb on - strand at 3652.531 kb on - strand at 3652.590 kb on - strand at 3652.709 kb on + strand at 3652.709 kb on + strand at 3652.726 kb on + strand at 3652.868 kb on - strand, within Shewana3_3048 at 3652.894 kb on + strand, within Shewana3_3048 at 3652.902 kb on - strand, within Shewana3_3048 at 3652.902 kb on - strand, within Shewana3_3048 at 3652.909 kb on + strand, within Shewana3_3048 at 3652.912 kb on - strand, within Shewana3_3048 at 3652.912 kb on - strand, within Shewana3_3048
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,650,223 + Shewana3_3045 0.24 +2.7 3,650,344 + Shewana3_3045 0.36 +4.5 3,650,345 + Shewana3_3045 0.36 +3.4 3,650,441 + Shewana3_3045 0.45 +4.1 3,650,761 + Shewana3_3045 0.77 +2.2 3,650,838 + Shewana3_3045 0.85 +3.8 3,650,838 + Shewana3_3045 0.85 +1.5 3,650,922 - -2.4 3,651,252 - Shewana3_3046 0.26 +2.3 3,651,314 + Shewana3_3046 0.32 +3.8 3,651,325 - Shewana3_3046 0.34 +1.4 3,651,516 - Shewana3_3046 0.54 +2.4 3,652,020 - +1.9 3,652,061 - -2.8 3,652,142 + +0.3 3,652,161 - +0.6 3,652,161 - +0.2 3,652,161 - -0.5 3,652,521 - +1.9 3,652,523 + +4.2 3,652,531 - -0.3 3,652,531 - +1.6 3,652,531 - +0.4 3,652,590 - +0.1 3,652,709 + +0.5 3,652,709 + +1.8 3,652,726 + -0.7 3,652,868 - Shewana3_3048 0.18 +0.1 3,652,894 + Shewana3_3048 0.21 +0.1 3,652,902 - Shewana3_3048 0.22 -0.5 3,652,902 - Shewana3_3048 0.22 +0.5 3,652,909 + Shewana3_3048 0.22 +0.8 3,652,912 - Shewana3_3048 0.23 +0.7 3,652,912 - Shewana3_3048 0.23 +0.6
Or see this region's nucleotide sequence