Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3010 and Shewana3_3011 are separated by 51 nucleotides Shewana3_3011 and tyrA are separated by 216 nucleotides
Shewana3_3010: Shewana3_3010 - oxidoreductase FAD-binding subunit (RefSeq), at 3,616,021 to 3,617,163
_3010
Shewana3_3011: Shewana3_3011 - hydroxylamine reductase (RefSeq), at 3,617,215 to 3,618,879
_3011
Shewana3_3012: tyrA - bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq), at 3,619,096 to 3,620,235
tyrA
Position (kb)
3617
3618
3619 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3616.431 kb on + strand, within Shewana3_3010 at 3616.519 kb on - strand, within Shewana3_3010 at 3616.601 kb on + strand, within Shewana3_3010 at 3616.601 kb on + strand, within Shewana3_3010 at 3616.641 kb on + strand, within Shewana3_3010 at 3617.052 kb on + strand at 3617.160 kb on + strand at 3617.474 kb on - strand, within Shewana3_3011 at 3617.945 kb on - strand, within Shewana3_3011 at 3618.048 kb on + strand, within Shewana3_3011 at 3618.198 kb on - strand, within Shewana3_3011 at 3618.330 kb on - strand, within Shewana3_3011 at 3618.417 kb on - strand, within Shewana3_3011 at 3618.417 kb on - strand, within Shewana3_3011 at 3618.608 kb on - strand, within Shewana3_3011 at 3618.704 kb on - strand, within Shewana3_3011 at 3618.709 kb on - strand, within Shewana3_3011 at 3619.844 kb on + strand, within tyrA
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,616,431 + Shewana3_3010 0.36 -0.4 3,616,519 - Shewana3_3010 0.44 -1.3 3,616,601 + Shewana3_3010 0.51 +1.6 3,616,601 + Shewana3_3010 0.51 -1.3 3,616,641 + Shewana3_3010 0.54 -0.8 3,617,052 + -0.1 3,617,160 + +1.1 3,617,474 - Shewana3_3011 0.16 -0.2 3,617,945 - Shewana3_3011 0.44 -1.5 3,618,048 + Shewana3_3011 0.50 +0.2 3,618,198 - Shewana3_3011 0.59 +0.9 3,618,330 - Shewana3_3011 0.67 +0.3 3,618,417 - Shewana3_3011 0.72 +1.6 3,618,417 - Shewana3_3011 0.72 +0.7 3,618,608 - Shewana3_3011 0.84 +0.8 3,618,704 - Shewana3_3011 0.89 +0.6 3,618,709 - Shewana3_3011 0.90 +1.3 3,619,844 + tyrA Shewana3_3012 0.66 -4.4
Or see this region's nucleotide sequence