Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2986 and Shewana3_2987 are separated by 473 nucleotides Shewana3_2987 and Shewana3_2988 are separated by 348 nucleotides
Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776
_2986
Shewana3_2987: Shewana3_2987 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,591,250 to 3,592,818
_2987
Shewana3_2988: Shewana3_2988 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,593,167 to 3,594,468
_2988
Position (kb)
3591
3592
3593 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3590.282 kb on + strand, within Shewana3_2986 at 3590.300 kb on - strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.578 kb on - strand, within Shewana3_2986 at 3590.618 kb on - strand at 3590.680 kb on + strand at 3590.688 kb on - strand at 3590.704 kb on + strand at 3590.704 kb on + strand at 3590.766 kb on - strand at 3590.784 kb on - strand at 3590.807 kb on - strand at 3590.844 kb on - strand at 3591.256 kb on - strand at 3591.258 kb on + strand at 3591.263 kb on + strand at 3591.266 kb on - strand at 3591.304 kb on - strand at 3591.322 kb on + strand at 3591.467 kb on - strand, within Shewana3_2987 at 3591.613 kb on - strand, within Shewana3_2987 at 3591.637 kb on + strand, within Shewana3_2987 at 3591.745 kb on + strand, within Shewana3_2987 at 3591.774 kb on - strand, within Shewana3_2987 at 3591.815 kb on + strand, within Shewana3_2987 at 3592.409 kb on + strand, within Shewana3_2987 at 3592.578 kb on - strand, within Shewana3_2987 at 3592.660 kb on - strand, within Shewana3_2987 at 3592.667 kb on + strand at 3592.716 kb on - strand at 3592.803 kb on - strand at 3592.808 kb on + strand at 3593.060 kb on + strand at 3593.068 kb on - strand at 3593.068 kb on - strand at 3593.253 kb on - strand at 3593.394 kb on + strand, within Shewana3_2988 at 3593.652 kb on - strand, within Shewana3_2988
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,590,282 + Shewana3_2986 0.73 -0.0 3,590,300 - Shewana3_2986 0.74 -2.7 3,590,570 + Shewana3_2986 0.89 -2.5 3,590,570 + Shewana3_2986 0.89 +1.4 3,590,578 - Shewana3_2986 0.89 +0.7 3,590,618 - +1.1 3,590,680 + -0.3 3,590,688 - +2.1 3,590,704 + +0.9 3,590,704 + +0.3 3,590,766 - +0.9 3,590,784 - +0.4 3,590,807 - +0.8 3,590,844 - -1.0 3,591,256 - +0.5 3,591,258 + -0.9 3,591,263 + +1.4 3,591,266 - +0.3 3,591,304 - +1.3 3,591,322 + -1.6 3,591,467 - Shewana3_2987 0.14 +0.3 3,591,613 - Shewana3_2987 0.23 +0.3 3,591,637 + Shewana3_2987 0.25 +0.9 3,591,745 + Shewana3_2987 0.32 -1.3 3,591,774 - Shewana3_2987 0.33 -1.4 3,591,815 + Shewana3_2987 0.36 +2.1 3,592,409 + Shewana3_2987 0.74 -0.2 3,592,578 - Shewana3_2987 0.85 +0.4 3,592,660 - Shewana3_2987 0.90 +0.4 3,592,667 + -0.2 3,592,716 - -0.6 3,592,803 - -0.1 3,592,808 + -1.1 3,593,060 + +0.9 3,593,068 - +3.1 3,593,068 - +1.5 3,593,253 - +2.2 3,593,394 + Shewana3_2988 0.17 +0.9 3,593,652 - Shewana3_2988 0.37 +1.7
Or see this region's nucleotide sequence