Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2897

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2896 and motB are separated by 216 nucleotidesmotB and Shewana3_2898 are separated by 3 nucleotides Shewana3_2896: Shewana3_2896 - thiamine biosynthesis protein ThiI (RefSeq), at 3,465,148 to 3,466,602 _2896 Shewana3_2897: motB - flagellar motor protein MotB (RefSeq), at 3,466,819 to 3,467,739 motB Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510 _2898 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 3466.095 kb on - strand, within Shewana3_2896at 3466.095 kb on - strand, within Shewana3_2896at 3466.341 kb on + strand, within Shewana3_2896at 3466.419 kb on - strand, within Shewana3_2896at 3466.567 kb on - strandat 3466.731 kb on - strandat 3466.739 kb on - strandat 3466.861 kb on - strandat 3466.900 kb on + strandat 3466.931 kb on - strand, within motBat 3467.033 kb on - strand, within motBat 3467.054 kb on + strand, within motBat 3467.149 kb on - strand, within motBat 3467.149 kb on - strand, within motBat 3467.297 kb on + strand, within motBat 3467.546 kb on - strand, within motBat 3467.615 kb on - strand, within motBat 3467.662 kb on + strandat 3467.838 kb on - strand, within Shewana3_2898at 3467.952 kb on - strand, within Shewana3_2898at 3468.037 kb on + strand, within Shewana3_2898at 3468.156 kb on - strand, within Shewana3_2898at 3468.286 kb on + strand, within Shewana3_2898at 3468.455 kb on + strandat 3468.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,466,095 - Shewana3_2896 0.65 -4.8
3,466,095 - Shewana3_2896 0.65 -3.9
3,466,341 + Shewana3_2896 0.82 -3.5
3,466,419 - Shewana3_2896 0.87 -4.3
3,466,567 - -5.4
3,466,731 - -0.1
3,466,739 - -0.3
3,466,861 - +1.8
3,466,900 + +2.7
3,466,931 - motB Shewana3_2897 0.12 +5.1
3,467,033 - motB Shewana3_2897 0.23 +0.6
3,467,054 + motB Shewana3_2897 0.26 +4.0
3,467,149 - motB Shewana3_2897 0.36 +4.6
3,467,149 - motB Shewana3_2897 0.36 +2.9
3,467,297 + motB Shewana3_2897 0.52 +3.8
3,467,546 - motB Shewana3_2897 0.79 +2.2
3,467,615 - motB Shewana3_2897 0.86 +2.1
3,467,662 + +2.9
3,467,838 - Shewana3_2898 0.12 +3.7
3,467,952 - Shewana3_2898 0.27 +4.8
3,468,037 + Shewana3_2898 0.38 +4.6
3,468,156 - Shewana3_2898 0.54 +5.0
3,468,286 + Shewana3_2898 0.71 +4.1
3,468,455 + +4.6
3,468,463 - +4.6

Or see this region's nucleotide sequence