Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2870

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2869 and Shewana3_2870 are separated by 104 nucleotidesShewana3_2870 and Shewana3_2871 are separated by 197 nucleotides Shewana3_2869: Shewana3_2869 - hypothetical protein (RefSeq), at 3,428,896 to 3,432,021 _2869 Shewana3_2870: Shewana3_2870 - diguanylate cyclase (RefSeq), at 3,432,126 to 3,433,793 _2870 Shewana3_2871: Shewana3_2871 - hypothetical protein (RefSeq), at 3,433,991 to 3,434,842 _2871 Position (kb) 3432 3433 3434Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3431.184 kb on + strand, within Shewana3_2869at 3431.199 kb on + strand, within Shewana3_2869at 3431.199 kb on + strand, within Shewana3_2869at 3431.199 kb on + strand, within Shewana3_2869at 3431.228 kb on - strand, within Shewana3_2869at 3431.402 kb on + strand, within Shewana3_2869at 3431.413 kb on - strand, within Shewana3_2869at 3431.572 kb on + strand, within Shewana3_2869at 3431.611 kb on - strand, within Shewana3_2869at 3431.824 kb on - strandat 3431.838 kb on - strandat 3431.880 kb on - strandat 3432.004 kb on + strandat 3432.043 kb on - strandat 3432.115 kb on - strandat 3432.394 kb on + strand, within Shewana3_2870at 3432.502 kb on + strand, within Shewana3_2870at 3432.580 kb on - strand, within Shewana3_2870at 3432.599 kb on + strand, within Shewana3_2870at 3432.613 kb on + strand, within Shewana3_2870at 3432.878 kb on - strand, within Shewana3_2870at 3432.920 kb on - strand, within Shewana3_2870at 3432.920 kb on - strand, within Shewana3_2870at 3433.353 kb on - strand, within Shewana3_2870at 3433.542 kb on - strand, within Shewana3_2870at 3433.576 kb on + strand, within Shewana3_2870at 3433.733 kb on + strandat 3433.741 kb on - strandat 3433.995 kb on - strandat 3434.237 kb on + strand, within Shewana3_2871at 3434.245 kb on - strand, within Shewana3_2871at 3434.272 kb on + strand, within Shewana3_2871at 3434.272 kb on + strand, within Shewana3_2871at 3434.280 kb on - strand, within Shewana3_2871at 3434.280 kb on - strand, within Shewana3_2871at 3434.280 kb on - strand, within Shewana3_2871at 3434.285 kb on + strand, within Shewana3_2871at 3434.417 kb on + strand, within Shewana3_2871at 3434.514 kb on - strand, within Shewana3_2871at 3434.576 kb on - strand, within Shewana3_2871at 3434.593 kb on - strand, within Shewana3_2871at 3434.601 kb on + strand, within Shewana3_2871at 3434.601 kb on + strand, within Shewana3_2871at 3434.609 kb on - strand, within Shewana3_2871at 3434.745 kb on + strand, within Shewana3_2871

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,431,184 + Shewana3_2869 0.73 -0.4
3,431,199 + Shewana3_2869 0.74 +0.8
3,431,199 + Shewana3_2869 0.74 -0.8
3,431,199 + Shewana3_2869 0.74 -0.9
3,431,228 - Shewana3_2869 0.75 +0.3
3,431,402 + Shewana3_2869 0.80 +0.8
3,431,413 - Shewana3_2869 0.81 +0.1
3,431,572 + Shewana3_2869 0.86 -0.6
3,431,611 - Shewana3_2869 0.87 +0.9
3,431,824 - -1.4
3,431,838 - +0.8
3,431,880 - -0.3
3,432,004 + -0.1
3,432,043 - -0.0
3,432,115 - +1.3
3,432,394 + Shewana3_2870 0.16 +0.9
3,432,502 + Shewana3_2870 0.23 +0.7
3,432,580 - Shewana3_2870 0.27 +0.4
3,432,599 + Shewana3_2870 0.28 +1.4
3,432,613 + Shewana3_2870 0.29 -0.3
3,432,878 - Shewana3_2870 0.45 +0.5
3,432,920 - Shewana3_2870 0.48 +0.1
3,432,920 - Shewana3_2870 0.48 -0.2
3,433,353 - Shewana3_2870 0.74 +0.6
3,433,542 - Shewana3_2870 0.85 -0.3
3,433,576 + Shewana3_2870 0.87 -1.8
3,433,733 + +1.0
3,433,741 - -0.6
3,433,995 - -1.1
3,434,237 + Shewana3_2871 0.29 +0.1
3,434,245 - Shewana3_2871 0.30 -0.9
3,434,272 + Shewana3_2871 0.33 -0.7
3,434,272 + Shewana3_2871 0.33 +0.2
3,434,280 - Shewana3_2871 0.34 -1.6
3,434,280 - Shewana3_2871 0.34 -1.0
3,434,280 - Shewana3_2871 0.34 -1.5
3,434,285 + Shewana3_2871 0.35 -0.1
3,434,417 + Shewana3_2871 0.50 +0.1
3,434,514 - Shewana3_2871 0.61 -5.7
3,434,576 - Shewana3_2871 0.69 -1.0
3,434,593 - Shewana3_2871 0.71 -0.9
3,434,601 + Shewana3_2871 0.72 +1.8
3,434,601 + Shewana3_2871 0.72 +0.7
3,434,609 - Shewana3_2871 0.73 -1.0
3,434,745 + Shewana3_2871 0.88 -0.6

Or see this region's nucleotide sequence