Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2766 and Shewana3_2767 are separated by 100 nucleotides Shewana3_2767 and Shewana3_2768 overlap by 1 nucleotides Shewana3_2768 and Shewana3_2769 are separated by 64 nucleotides
Shewana3_2766: Shewana3_2766 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 3,304,349 to 3,305,251
_2766
Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503
_2767
Shewana3_2768: Shewana3_2768 - enoyl-CoA hydratase (RefSeq), at 3,306,503 to 3,307,276
_2768
Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) , at 3,307,341 to 3,308,498
_2769
Position (kb)
3305
3306
3307 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3304.841 kb on + strand, within Shewana3_2766 at 3304.849 kb on - strand, within Shewana3_2766 at 3304.907 kb on + strand, within Shewana3_2766 at 3304.908 kb on + strand, within Shewana3_2766 at 3304.980 kb on - strand, within Shewana3_2766 at 3305.067 kb on - strand, within Shewana3_2766 at 3305.110 kb on + strand, within Shewana3_2766 at 3305.143 kb on - strand, within Shewana3_2766 at 3305.247 kb on - strand at 3305.416 kb on - strand at 3305.471 kb on - strand, within Shewana3_2767 at 3305.510 kb on + strand, within Shewana3_2767 at 3305.675 kb on - strand, within Shewana3_2767 at 3305.704 kb on - strand, within Shewana3_2767 at 3305.873 kb on - strand, within Shewana3_2767 at 3305.978 kb on + strand, within Shewana3_2767 at 3305.986 kb on - strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.299 kb on + strand, within Shewana3_2767 at 3306.522 kb on + strand at 3306.560 kb on - strand at 3306.785 kb on - strand, within Shewana3_2768 at 3306.800 kb on - strand, within Shewana3_2768 at 3306.826 kb on - strand, within Shewana3_2768 at 3306.837 kb on - strand, within Shewana3_2768 at 3306.874 kb on - strand, within Shewana3_2768 at 3306.879 kb on - strand, within Shewana3_2768 at 3306.882 kb on + strand, within Shewana3_2768 at 3306.951 kb on - strand, within Shewana3_2768 at 3307.167 kb on + strand, within Shewana3_2768 at 3307.176 kb on - strand, within Shewana3_2768 at 3307.208 kb on - strand at 3307.256 kb on + strand at 3307.320 kb on + strand at 3307.458 kb on + strand, within Shewana3_2769
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,304,841 + Shewana3_2766 0.54 -1.3 3,304,849 - Shewana3_2766 0.55 -1.0 3,304,907 + Shewana3_2766 0.62 -0.7 3,304,908 + Shewana3_2766 0.62 -2.3 3,304,980 - Shewana3_2766 0.70 -1.0 3,305,067 - Shewana3_2766 0.80 -0.1 3,305,110 + Shewana3_2766 0.84 +0.9 3,305,143 - Shewana3_2766 0.88 -2.1 3,305,247 - -0.7 3,305,416 - -0.9 3,305,471 - Shewana3_2767 0.10 -4.3 3,305,510 + Shewana3_2767 0.14 -4.8 3,305,675 - Shewana3_2767 0.28 -2.5 3,305,704 - Shewana3_2767 0.31 -3.5 3,305,873 - Shewana3_2767 0.45 -2.4 3,305,978 + Shewana3_2767 0.54 -4.8 3,305,986 - Shewana3_2767 0.55 -4.0 3,306,124 + Shewana3_2767 0.67 -5.6 3,306,124 + Shewana3_2767 0.67 -2.0 3,306,299 + Shewana3_2767 0.82 -3.5 3,306,522 + -3.4 3,306,560 - -2.9 3,306,785 - Shewana3_2768 0.36 -0.1 3,306,800 - Shewana3_2768 0.38 -1.3 3,306,826 - Shewana3_2768 0.42 -2.5 3,306,837 - Shewana3_2768 0.43 -3.1 3,306,874 - Shewana3_2768 0.48 -4.2 3,306,879 - Shewana3_2768 0.49 -2.2 3,306,882 + Shewana3_2768 0.49 -2.5 3,306,951 - Shewana3_2768 0.58 -3.5 3,307,167 + Shewana3_2768 0.86 -1.4 3,307,176 - Shewana3_2768 0.87 -3.4 3,307,208 - -2.7 3,307,256 + -0.7 3,307,320 + -0.9 3,307,458 + Shewana3_2769 0.10 -1.2
Or see this region's nucleotide sequence