Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2738 and Shewana3_2739 are separated by 252 nucleotides Shewana3_2739 and Shewana3_2740 are separated by 125 nucleotides Shewana3_2740 and Shewana3_2741 are separated by 303 nucleotides
Shewana3_2738: Shewana3_2738 - hypothetical protein (RefSeq), at 3,269,967 to 3,270,791
_2738
Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616
_2739
Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140
_2740
Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046
_2741
Position (kb)
3271
3272 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3270.247 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.480 kb on - strand, within Shewana3_2738 at 3270.527 kb on - strand, within Shewana3_2738 at 3270.865 kb on + strand at 3271.310 kb on + strand, within Shewana3_2739 at 3271.318 kb on - strand, within Shewana3_2739 at 3271.318 kb on - strand, within Shewana3_2739 at 3271.441 kb on - strand, within Shewana3_2739 at 3271.629 kb on - strand at 3271.638 kb on - strand at 3271.667 kb on + strand at 3271.667 kb on + strand at 3272.305 kb on + strand at 3272.332 kb on + strand at 3272.369 kb on - strand at 3272.411 kb on - strand at 3272.444 kb on + strand at 3272.452 kb on - strand at 3272.543 kb on + strand, within Shewana3_2741 at 3272.551 kb on - strand, within Shewana3_2741
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,270,247 + Shewana3_2738 0.34 +0.1 3,270,372 + Shewana3_2738 0.49 +1.8 3,270,372 + Shewana3_2738 0.49 -1.2 3,270,372 + Shewana3_2738 0.49 -1.2 3,270,372 + Shewana3_2738 0.49 -0.3 3,270,372 + Shewana3_2738 0.49 -1.0 3,270,380 - Shewana3_2738 0.50 +1.3 3,270,380 - Shewana3_2738 0.50 +0.2 3,270,380 - Shewana3_2738 0.50 +0.7 3,270,480 - Shewana3_2738 0.62 +1.2 3,270,527 - Shewana3_2738 0.68 +2.7 3,270,865 + -1.1 3,271,310 + Shewana3_2739 0.46 +0.4 3,271,318 - Shewana3_2739 0.48 +0.4 3,271,318 - Shewana3_2739 0.48 +0.3 3,271,441 - Shewana3_2739 0.69 +0.7 3,271,629 - +2.1 3,271,638 - +1.5 3,271,667 + -0.1 3,271,667 + -3.5 3,272,305 + +0.9 3,272,332 + +1.3 3,272,369 - +0.3 3,272,411 - +0.9 3,272,444 + +2.1 3,272,452 - -0.8 3,272,543 + Shewana3_2741 0.16 -0.2 3,272,551 - Shewana3_2741 0.18 +1.9
Or see this region's nucleotide sequence