Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2610

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2608 and Shewana3_2609 are separated by 125 nucleotidesShewana3_2609 and Shewana3_2610 are separated by 351 nucleotidesShewana3_2610 and Shewana3_2611 are separated by 266 nucleotides Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071 _2608 Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655 _2609 Shewana3_2610: Shewana3_2610 - peptidase M23B (RefSeq), at 3,114,007 to 3,115,302 _2610 Shewana3_2611: Shewana3_2611 - exonuclease SbcC, putative (RefSeq), at 3,115,569 to 3,118,625 _2611 Position (kb) 3114 3115 3116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3113.371 kb on + strand, within Shewana3_2609at 3113.583 kb on + strand, within Shewana3_2609at 3113.760 kb on - strandat 3113.840 kb on - strandat 3113.911 kb on - strandat 3113.921 kb on + strandat 3113.931 kb on - strandat 3114.501 kb on - strand, within Shewana3_2610at 3115.490 kb on - strandat 3115.726 kb on - strandat 3115.815 kb on + strandat 3115.815 kb on + strandat 3115.887 kb on + strand, within Shewana3_2611at 3116.218 kb on + strand, within Shewana3_2611at 3116.218 kb on + strand, within Shewana3_2611at 3116.226 kb on - strand, within Shewana3_2611at 3116.291 kb on + strand, within Shewana3_2611

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,113,371 + Shewana3_2609 0.38 -3.7
3,113,583 + Shewana3_2609 0.84 +1.1
3,113,760 - -1.6
3,113,840 - -1.8
3,113,911 - -0.4
3,113,921 + +1.1
3,113,931 - +1.7
3,114,501 - Shewana3_2610 0.38 +2.4
3,115,490 - +0.7
3,115,726 - +0.2
3,115,815 + -0.9
3,115,815 + +0.3
3,115,887 + Shewana3_2611 0.10 +0.0
3,116,218 + Shewana3_2611 0.21 +0.4
3,116,218 + Shewana3_2611 0.21 -2.4
3,116,226 - Shewana3_2611 0.21 -0.8
3,116,291 + Shewana3_2611 0.24 -0.5

Or see this region's nucleotide sequence