Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2606 and Shewana3_2607 are separated by 98 nucleotides Shewana3_2607 and Shewana3_2608 are separated by 57 nucleotides Shewana3_2608 and Shewana3_2609 are separated by 125 nucleotides Shewana3_2609 and Shewana3_2610 are separated by 351 nucleotides
Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968
_2606
Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504
_2607
Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071
_2608
Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655
_2609
Shewana3_2610: Shewana3_2610 - peptidase M23B (RefSeq), at 3,114,007 to 3,115,302
_2610
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3111.988 kb on - strand at 3112.052 kb on + strand at 3112.163 kb on - strand, within Shewana3_2607 at 3112.231 kb on - strand, within Shewana3_2607 at 3112.301 kb on + strand, within Shewana3_2607 at 3112.552 kb on + strand at 3112.560 kb on - strand at 3112.560 kb on - strand at 3113.371 kb on + strand, within Shewana3_2609 at 3113.583 kb on + strand, within Shewana3_2609 at 3113.760 kb on - strand at 3113.840 kb on - strand at 3113.911 kb on - strand at 3113.921 kb on + strand at 3113.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,111,988 - +0.3 3,112,052 + -0.0 3,112,163 - Shewana3_2607 0.22 -1.3 3,112,231 - Shewana3_2607 0.37 -2.0 3,112,301 + Shewana3_2607 0.53 -2.5 3,112,552 + -2.2 3,112,560 - +0.5 3,112,560 - +0.2 3,113,371 + Shewana3_2609 0.38 -3.7 3,113,583 + Shewana3_2609 0.84 +1.1 3,113,760 - -1.6 3,113,840 - -1.8 3,113,911 - -0.4 3,113,921 + +1.1 3,113,931 - +1.7
Or see this region's nucleotide sequence