Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2387 and Shewana3_2388 are separated by 21 nucleotides Shewana3_2388 and Shewana3_2389 are separated by 130 nucleotides Shewana3_2389 and Shewana3_2390 overlap by 8 nucleotides
Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651
_2387
Shewana3_2388: Shewana3_2388 - hypothetical protein (RefSeq), at 2,867,673 to 2,868,485
_2388
Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323
_2389
Shewana3_2390: Shewana3_2390 - hypothetical protein (RefSeq), at 2,869,316 to 2,869,624
_2390
Position (kb)
2867
2868
2869 Strain fitness (log2 ratio)
-2
-1
0
1 at 2866.849 kb on - strand at 2866.865 kb on + strand at 2866.873 kb on - strand, within Shewana3_2387 at 2867.309 kb on - strand, within Shewana3_2387 at 2867.604 kb on + strand at 2867.617 kb on - strand at 2867.751 kb on + strand at 2867.833 kb on - strand, within Shewana3_2388 at 2868.222 kb on + strand, within Shewana3_2388 at 2868.400 kb on + strand, within Shewana3_2388 at 2868.426 kb on + strand at 2868.434 kb on - strand at 2868.434 kb on - strand at 2868.434 kb on - strand at 2868.804 kb on + strand, within Shewana3_2389 at 2868.872 kb on + strand, within Shewana3_2389 at 2868.919 kb on + strand, within Shewana3_2389 at 2868.927 kb on - strand, within Shewana3_2389 at 2869.063 kb on + strand, within Shewana3_2389 at 2869.149 kb on + strand, within Shewana3_2389 at 2869.400 kb on + strand, within Shewana3_2390 at 2869.472 kb on + strand, within Shewana3_2390
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,866,849 - -1.0 2,866,865 + -0.7 2,866,873 - Shewana3_2387 0.10 -0.5 2,867,309 - Shewana3_2387 0.60 -0.9 2,867,604 + -2.1 2,867,617 - -0.4 2,867,751 + -0.7 2,867,833 - Shewana3_2388 0.20 +0.1 2,868,222 + Shewana3_2388 0.68 -1.5 2,868,400 + Shewana3_2388 0.89 +0.3 2,868,426 + -2.1 2,868,434 - -0.6 2,868,434 - -1.8 2,868,434 - +0.1 2,868,804 + Shewana3_2389 0.27 -0.1 2,868,872 + Shewana3_2389 0.36 -1.5 2,868,919 + Shewana3_2389 0.43 -0.8 2,868,927 - Shewana3_2389 0.44 -1.3 2,869,063 + Shewana3_2389 0.63 -0.7 2,869,149 + Shewana3_2389 0.75 -0.6 2,869,400 + Shewana3_2390 0.27 +0.4 2,869,472 + Shewana3_2390 0.50 +1.0
Or see this region's nucleotide sequence