Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2370

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2369 and Shewana3_2370 are separated by 252 nucleotidesShewana3_2370 and Shewana3_2371 are separated by 263 nucleotidesShewana3_2371 and Shewana3_2372 are separated by 2 nucleotides Shewana3_2369: Shewana3_2369 - beta-lactamase domain-containing protein (RefSeq), at 2,847,156 to 2,847,959 _2369 Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759 _2370 Shewana3_2371: Shewana3_2371 - intracellular proteinase inhibitor domain-containing protein (RefSeq), at 2,850,023 to 2,850,682 _2371 Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505 _2372 Position (kb) 2848 2849 2850Strain fitness (log2 ratio) -3 -2 -1 0 1at 2847.372 kb on - strand, within Shewana3_2369at 2847.455 kb on + strand, within Shewana3_2369at 2847.492 kb on + strand, within Shewana3_2369at 2847.501 kb on - strand, within Shewana3_2369at 2847.639 kb on - strand, within Shewana3_2369at 2847.639 kb on - strand, within Shewana3_2369at 2847.811 kb on + strand, within Shewana3_2369at 2847.856 kb on + strand, within Shewana3_2369at 2847.922 kb on + strandat 2848.279 kb on + strandat 2848.287 kb on - strandat 2848.345 kb on - strandat 2848.708 kb on + strand, within Shewana3_2370at 2849.058 kb on - strand, within Shewana3_2370at 2849.475 kb on - strand, within Shewana3_2370at 2849.769 kb on - strandat 2849.804 kb on + strandat 2850.048 kb on - strandat 2850.202 kb on + strand, within Shewana3_2371at 2850.385 kb on + strand, within Shewana3_2371at 2850.554 kb on - strand, within Shewana3_2371at 2850.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,847,372 - Shewana3_2369 0.27 +0.4
2,847,455 + Shewana3_2369 0.37 +0.6
2,847,492 + Shewana3_2369 0.42 -3.6
2,847,501 - Shewana3_2369 0.43 -0.1
2,847,639 - Shewana3_2369 0.60 +1.1
2,847,639 - Shewana3_2369 0.60 +0.6
2,847,811 + Shewana3_2369 0.81 +0.2
2,847,856 + Shewana3_2369 0.87 +1.3
2,847,922 + -0.0
2,848,279 + -2.5
2,848,287 - +0.7
2,848,345 - -0.9
2,848,708 + Shewana3_2370 0.32 -1.3
2,849,058 - Shewana3_2370 0.55 +0.4
2,849,475 - Shewana3_2370 0.82 -1.3
2,849,769 - +1.2
2,849,804 + -0.2
2,850,048 - +0.5
2,850,202 + Shewana3_2371 0.27 -0.8
2,850,385 + Shewana3_2371 0.55 -1.2
2,850,554 - Shewana3_2371 0.80 -0.1
2,850,737 - -1.2

Or see this region's nucleotide sequence