Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2295

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2293 and Shewana3_2294 are separated by 104 nucleotidesShewana3_2294 and Shewana3_2295 overlap by 8 nucleotidesShewana3_2295 and Shewana3_2296 are separated by 111 nucleotides Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078 _2293 Shewana3_2294: Shewana3_2294 - hypothetical protein (RefSeq), at 2,758,183 to 2,758,470 _2294 Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839 _2295 Shewana3_2296: Shewana3_2296 - hypothetical protein (RefSeq), at 2,759,951 to 2,760,688 _2296 Position (kb) 2758 2759 2760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2757.577 kb on - strand, within Shewana3_2293at 2757.625 kb on + strand, within Shewana3_2293at 2757.702 kb on - strand, within Shewana3_2293at 2757.728 kb on + strand, within Shewana3_2293at 2757.890 kb on + strand, within Shewana3_2293at 2758.050 kb on - strandat 2758.141 kb on - strandat 2758.607 kb on - strand, within Shewana3_2295at 2758.617 kb on - strand, within Shewana3_2295at 2758.754 kb on - strand, within Shewana3_2295at 2758.759 kb on - strand, within Shewana3_2295at 2759.061 kb on + strand, within Shewana3_2295at 2759.164 kb on + strand, within Shewana3_2295at 2759.373 kb on - strand, within Shewana3_2295at 2759.606 kb on + strand, within Shewana3_2295at 2759.702 kb on + strandat 2759.833 kb on + strandat 2760.051 kb on - strand, within Shewana3_2296at 2760.076 kb on + strand, within Shewana3_2296at 2760.084 kb on - strand, within Shewana3_2296at 2760.084 kb on - strand, within Shewana3_2296at 2760.094 kb on - strand, within Shewana3_2296at 2760.110 kb on + strand, within Shewana3_2296at 2760.165 kb on - strand, within Shewana3_2296at 2760.464 kb on - strand, within Shewana3_2296at 2760.466 kb on - strand, within Shewana3_2296at 2760.559 kb on - strand, within Shewana3_2296

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,757,577 - Shewana3_2293 0.51 -2.1
2,757,625 + Shewana3_2293 0.56 +1.5
2,757,702 - Shewana3_2293 0.63 -1.3
2,757,728 + Shewana3_2293 0.66 -2.4
2,757,890 + Shewana3_2293 0.82 -3.2
2,758,050 - -2.7
2,758,141 - +0.5
2,758,607 - Shewana3_2295 0.10 +2.3
2,758,617 - Shewana3_2295 0.11 +2.1
2,758,754 - Shewana3_2295 0.21 +2.5
2,758,759 - Shewana3_2295 0.21 -0.3
2,759,061 + Shewana3_2295 0.43 +3.7
2,759,164 + Shewana3_2295 0.51 +2.3
2,759,373 - Shewana3_2295 0.66 +3.1
2,759,606 + Shewana3_2295 0.83 +1.6
2,759,702 + +1.9
2,759,833 + -0.2
2,760,051 - Shewana3_2296 0.14 -1.5
2,760,076 + Shewana3_2296 0.17 +1.6
2,760,084 - Shewana3_2296 0.18 -1.0
2,760,084 - Shewana3_2296 0.18 +0.0
2,760,094 - Shewana3_2296 0.19 +0.7
2,760,110 + Shewana3_2296 0.22 +0.3
2,760,165 - Shewana3_2296 0.29 +0.7
2,760,464 - Shewana3_2296 0.70 +0.8
2,760,466 - Shewana3_2296 0.70 +0.5
2,760,559 - Shewana3_2296 0.82 -0.4

Or see this region's nucleotide sequence