Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2293 and Shewana3_2294 are separated by 104 nucleotides Shewana3_2294 and Shewana3_2295 overlap by 8 nucleotides Shewana3_2295 and Shewana3_2296 are separated by 111 nucleotides
Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078
_2293
Shewana3_2294: Shewana3_2294 - hypothetical protein (RefSeq), at 2,758,183 to 2,758,470
_2294
Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839
_2295
Shewana3_2296: Shewana3_2296 - hypothetical protein (RefSeq), at 2,759,951 to 2,760,688
_2296
Position (kb)
2758
2759
2760 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2757.577 kb on - strand, within Shewana3_2293 at 2757.625 kb on + strand, within Shewana3_2293 at 2757.702 kb on - strand, within Shewana3_2293 at 2757.728 kb on + strand, within Shewana3_2293 at 2757.890 kb on + strand, within Shewana3_2293 at 2758.050 kb on - strand at 2758.141 kb on - strand at 2758.607 kb on - strand, within Shewana3_2295 at 2758.617 kb on - strand, within Shewana3_2295 at 2758.754 kb on - strand, within Shewana3_2295 at 2758.759 kb on - strand, within Shewana3_2295 at 2759.061 kb on + strand, within Shewana3_2295 at 2759.164 kb on + strand, within Shewana3_2295 at 2759.373 kb on - strand, within Shewana3_2295 at 2759.606 kb on + strand, within Shewana3_2295 at 2759.702 kb on + strand at 2759.833 kb on + strand at 2760.051 kb on - strand, within Shewana3_2296 at 2760.076 kb on + strand, within Shewana3_2296 at 2760.084 kb on - strand, within Shewana3_2296 at 2760.084 kb on - strand, within Shewana3_2296 at 2760.094 kb on - strand, within Shewana3_2296 at 2760.110 kb on + strand, within Shewana3_2296 at 2760.165 kb on - strand, within Shewana3_2296 at 2760.464 kb on - strand, within Shewana3_2296 at 2760.466 kb on - strand, within Shewana3_2296 at 2760.559 kb on - strand, within Shewana3_2296
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,757,577 - Shewana3_2293 0.51 -2.1 2,757,625 + Shewana3_2293 0.56 +1.5 2,757,702 - Shewana3_2293 0.63 -1.3 2,757,728 + Shewana3_2293 0.66 -2.4 2,757,890 + Shewana3_2293 0.82 -3.2 2,758,050 - -2.7 2,758,141 - +0.5 2,758,607 - Shewana3_2295 0.10 +2.3 2,758,617 - Shewana3_2295 0.11 +2.1 2,758,754 - Shewana3_2295 0.21 +2.5 2,758,759 - Shewana3_2295 0.21 -0.3 2,759,061 + Shewana3_2295 0.43 +3.7 2,759,164 + Shewana3_2295 0.51 +2.3 2,759,373 - Shewana3_2295 0.66 +3.1 2,759,606 + Shewana3_2295 0.83 +1.6 2,759,702 + +1.9 2,759,833 + -0.2 2,760,051 - Shewana3_2296 0.14 -1.5 2,760,076 + Shewana3_2296 0.17 +1.6 2,760,084 - Shewana3_2296 0.18 -1.0 2,760,084 - Shewana3_2296 0.18 +0.0 2,760,094 - Shewana3_2296 0.19 +0.7 2,760,110 + Shewana3_2296 0.22 +0.3 2,760,165 - Shewana3_2296 0.29 +0.7 2,760,464 - Shewana3_2296 0.70 +0.8 2,760,466 - Shewana3_2296 0.70 +0.5 2,760,559 - Shewana3_2296 0.82 -0.4
Or see this region's nucleotide sequence