Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2167 and Shewana3_2168 are separated by 125 nucleotides Shewana3_2168 and Shewana3_2169 are separated by 0 nucleotides Shewana3_2169 and Shewana3_2170 are separated by 3 nucleotides
Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544
_2167
Shewana3_2168: Shewana3_2168 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,600,670 to 2,601,248
_2168
Shewana3_2169: Shewana3_2169 - electron transport complex protein RnfB (RefSeq), at 2,601,249 to 2,601,830
_2169
Shewana3_2170: Shewana3_2170 - electron transport complex protein RnfC (RefSeq), at 2,601,834 to 2,604,200
_2170
Position (kb)
2600
2601
2602 Strain fitness (log2 ratio)
-2
-1
0
1 at 2599.694 kb on + strand, within Shewana3_2167 at 2599.709 kb on + strand, within Shewana3_2167 at 2599.743 kb on - strand, within Shewana3_2167 at 2599.743 kb on - strand, within Shewana3_2167 at 2599.748 kb on - strand, within Shewana3_2167 at 2600.024 kb on + strand, within Shewana3_2167 at 2600.096 kb on + strand, within Shewana3_2167 at 2600.104 kb on - strand, within Shewana3_2167 at 2600.258 kb on - strand, within Shewana3_2167 at 2600.275 kb on + strand, within Shewana3_2167 at 2600.334 kb on + strand, within Shewana3_2167 at 2600.361 kb on - strand at 2600.511 kb on + strand at 2600.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,599,694 + Shewana3_2167 0.55 -1.2 2,599,709 + Shewana3_2167 0.56 -1.9 2,599,743 - Shewana3_2167 0.58 -0.2 2,599,743 - Shewana3_2167 0.58 +0.9 2,599,748 - Shewana3_2167 0.58 +0.6 2,600,024 + Shewana3_2167 0.73 -1.7 2,600,096 + Shewana3_2167 0.76 -0.6 2,600,104 - Shewana3_2167 0.77 +0.0 2,600,258 - Shewana3_2167 0.85 +0.5 2,600,275 + Shewana3_2167 0.86 +0.9 2,600,334 + Shewana3_2167 0.89 -0.7 2,600,361 - -2.0 2,600,511 + +0.2 2,600,563 - +0.9
Or see this region's nucleotide sequence