Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2167

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0095 and Shewana3_R0096 are separated by 47 nucleotidesShewana3_R0096 and Shewana3_R0097 are separated by 31 nucleotidesShewana3_R0097 and Shewana3_R0098 are separated by 46 nucleotidesShewana3_R0098 and Shewana3_R0099 are separated by 46 nucleotidesShewana3_R0099 and Shewana3_2167 are separated by 208 nucleotidesShewana3_2167 and Shewana3_2168 are separated by 125 nucleotidesShewana3_2168 and Shewana3_2169 are separated by 0 nucleotides Shewana3_R0095: Shewana3_R0095 - tRNA-Asn (RefSeq), at 2,597,882 to 2,597,957 _R0095 Shewana3_R0096: Shewana3_R0096 - tRNA-Asn (RefSeq), at 2,598,005 to 2,598,080 _R0096 Shewana3_R0097: Shewana3_R0097 - tRNA-Asn (RefSeq), at 2,598,112 to 2,598,187 _R0097 Shewana3_R0098: Shewana3_R0098 - tRNA-Asn (RefSeq), at 2,598,234 to 2,598,309 _R0098 Shewana3_R0099: Shewana3_R0099 - tRNA-Asn (RefSeq), at 2,598,356 to 2,598,431 _R0099 Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544 _2167 Shewana3_2168: Shewana3_2168 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,600,670 to 2,601,248 _2168 Shewana3_2169: Shewana3_2169 - electron transport complex protein RnfB (RefSeq), at 2,601,249 to 2,601,830 _2169 Position (kb) 2598 2599 2600 2601Strain fitness (log2 ratio) -3 -2 -1 0 1at 2598.296 kb on + strand, within Shewana3_R0098at 2598.472 kb on - strandat 2598.887 kb on - strand, within Shewana3_2167at 2599.181 kb on + strand, within Shewana3_2167at 2599.336 kb on + strand, within Shewana3_2167at 2599.409 kb on - strand, within Shewana3_2167at 2599.521 kb on + strand, within Shewana3_2167at 2599.694 kb on + strand, within Shewana3_2167at 2599.709 kb on + strand, within Shewana3_2167at 2599.743 kb on - strand, within Shewana3_2167at 2599.743 kb on - strand, within Shewana3_2167at 2599.748 kb on - strand, within Shewana3_2167at 2600.024 kb on + strand, within Shewana3_2167at 2600.096 kb on + strand, within Shewana3_2167at 2600.104 kb on - strand, within Shewana3_2167at 2600.258 kb on - strand, within Shewana3_2167at 2600.275 kb on + strand, within Shewana3_2167at 2600.334 kb on + strand, within Shewana3_2167at 2600.361 kb on - strandat 2600.511 kb on + strandat 2600.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,598,296 + Shewana3_R0098 0.82 +1.3
2,598,472 - -2.2
2,598,887 - Shewana3_2167 0.13 +0.9
2,599,181 + Shewana3_2167 0.28 -0.9
2,599,336 + Shewana3_2167 0.37 -2.9
2,599,409 - Shewana3_2167 0.40 +0.6
2,599,521 + Shewana3_2167 0.46 +0.9
2,599,694 + Shewana3_2167 0.55 -1.2
2,599,709 + Shewana3_2167 0.56 -1.9
2,599,743 - Shewana3_2167 0.58 -0.2
2,599,743 - Shewana3_2167 0.58 +0.9
2,599,748 - Shewana3_2167 0.58 +0.6
2,600,024 + Shewana3_2167 0.73 -1.7
2,600,096 + Shewana3_2167 0.76 -0.6
2,600,104 - Shewana3_2167 0.77 +0.0
2,600,258 - Shewana3_2167 0.85 +0.5
2,600,275 + Shewana3_2167 0.86 +0.9
2,600,334 + Shewana3_2167 0.89 -0.7
2,600,361 - -2.0
2,600,511 + +0.2
2,600,563 - +0.9

Or see this region's nucleotide sequence