Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2117 and Shewana3_2118 are separated by 59 nucleotides Shewana3_2118 and Shewana3_2119 overlap by 8 nucleotides Shewana3_2119 and Shewana3_2120 are separated by 317 nucleotides
Shewana3_2117: Shewana3_2117 - PP-loop domain-containing protein (RefSeq), at 2,540,707 to 2,541,675
_2117
Shewana3_2118: Shewana3_2118 - hypothetical protein (RefSeq), at 2,541,735 to 2,542,358
_2118
Shewana3_2119: Shewana3_2119 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (RefSeq), at 2,542,351 to 2,543,163
_2119
Shewana3_2120: Shewana3_2120 - hypothetical protein (RefSeq), at 2,543,481 to 2,544,404
_2120
Position (kb)
2542
2543
2544 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2541.429 kb on + strand, within Shewana3_2117 at 2541.749 kb on + strand at 2541.823 kb on - strand, within Shewana3_2118 at 2541.856 kb on - strand, within Shewana3_2118 at 2541.876 kb on - strand, within Shewana3_2118 at 2542.008 kb on + strand, within Shewana3_2118 at 2542.053 kb on - strand, within Shewana3_2118 at 2542.568 kb on - strand, within Shewana3_2119 at 2542.601 kb on + strand, within Shewana3_2119 at 2542.774 kb on + strand, within Shewana3_2119 at 2542.846 kb on + strand, within Shewana3_2119 at 2543.124 kb on - strand at 2543.129 kb on - strand at 2543.285 kb on - strand at 2543.640 kb on + strand, within Shewana3_2120 at 2543.645 kb on + strand, within Shewana3_2120 at 2543.803 kb on + strand, within Shewana3_2120
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,541,429 + Shewana3_2117 0.75 +1.0 2,541,749 + -0.7 2,541,823 - Shewana3_2118 0.14 +0.2 2,541,856 - Shewana3_2118 0.19 -0.2 2,541,876 - Shewana3_2118 0.23 -0.7 2,542,008 + Shewana3_2118 0.44 -2.6 2,542,053 - Shewana3_2118 0.51 -0.2 2,542,568 - Shewana3_2119 0.27 -0.8 2,542,601 + Shewana3_2119 0.31 -0.7 2,542,774 + Shewana3_2119 0.52 -3.0 2,542,846 + Shewana3_2119 0.61 -0.0 2,543,124 - -1.2 2,543,129 - -1.5 2,543,285 - -1.0 2,543,640 + Shewana3_2120 0.17 -0.8 2,543,645 + Shewana3_2120 0.18 +1.3 2,543,803 + Shewana3_2120 0.35 -1.9
Or see this region's nucleotide sequence