Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1761 and Shewana3_1762 are separated by 11 nucleotides Shewana3_1762 and dcd are separated by 29 nucleotides dcd and Shewana3_1764 are separated by 5 nucleotides Shewana3_1764 and Shewana3_1765 overlap by 4 nucleotides
Shewana3_1761: Shewana3_1761 - ATP-binding Mrp/Nbp35 family protein (RefSeq), at 2,076,078 to 2,077,193
_1761
Shewana3_1762: Shewana3_1762 - uridine kinase (RefSeq), at 2,077,205 to 2,077,843
_1762
Shewana3_1763: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 2,077,873 to 2,078,454
dcd
Shewana3_1764: Shewana3_1764 - aminodeoxychorismate lyase apoprotein (RefSeq), at 2,078,460 to 2,079,269
_1764
Shewana3_1765: Shewana3_1765 - aminodeoxychorismate lyase (RefSeq), at 2,079,266 to 2,080,276
_1765
Position (kb)
2077
2078
2079 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2077.087 kb on + strand at 2078.499 kb on - strand at 2078.816 kb on + strand, within Shewana3_1764 at 2079.211 kb on + strand at 2079.374 kb on + strand, within Shewana3_1765 at 2079.380 kb on + strand, within Shewana3_1765 at 2079.398 kb on + strand, within Shewana3_1765
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,077,087 + -3.4 2,078,499 - -4.4 2,078,816 + Shewana3_1764 0.44 -1.1 2,079,211 + -1.7 2,079,374 + Shewana3_1765 0.11 +0.6 2,079,380 + Shewana3_1765 0.11 +1.2 2,079,398 + Shewana3_1765 0.13 -1.5
Or see this region's nucleotide sequence