Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1762

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1761 and Shewana3_1762 are separated by 11 nucleotidesShewana3_1762 and dcd are separated by 29 nucleotidesdcd and Shewana3_1764 are separated by 5 nucleotides Shewana3_1761: Shewana3_1761 - ATP-binding Mrp/Nbp35 family protein (RefSeq), at 2,076,078 to 2,077,193 _1761 Shewana3_1762: Shewana3_1762 - uridine kinase (RefSeq), at 2,077,205 to 2,077,843 _1762 Shewana3_1763: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 2,077,873 to 2,078,454 dcd Shewana3_1764: Shewana3_1764 - aminodeoxychorismate lyase apoprotein (RefSeq), at 2,078,460 to 2,079,269 _1764 Position (kb) 2077 2078Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2076.215 kb on + strand, within Shewana3_1761at 2076.239 kb on + strand, within Shewana3_1761at 2076.244 kb on + strand, within Shewana3_1761at 2076.372 kb on + strand, within Shewana3_1761at 2076.459 kb on + strand, within Shewana3_1761at 2076.565 kb on - strand, within Shewana3_1761at 2076.580 kb on + strand, within Shewana3_1761at 2076.670 kb on + strand, within Shewana3_1761at 2076.837 kb on + strand, within Shewana3_1761at 2077.087 kb on + strandat 2078.499 kb on - strandat 2078.816 kb on + strand, within Shewana3_1764

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,076,215 + Shewana3_1761 0.12 -2.7
2,076,239 + Shewana3_1761 0.14 -1.8
2,076,244 + Shewana3_1761 0.15 -0.9
2,076,372 + Shewana3_1761 0.26 -3.7
2,076,459 + Shewana3_1761 0.34 -2.5
2,076,565 - Shewana3_1761 0.44 -1.4
2,076,580 + Shewana3_1761 0.45 -1.8
2,076,670 + Shewana3_1761 0.53 -1.5
2,076,837 + Shewana3_1761 0.68 -1.4
2,077,087 + -3.4
2,078,499 - -4.4
2,078,816 + Shewana3_1764 0.44 -1.1

Or see this region's nucleotide sequence