Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1752

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1750 and Shewana3_1751 are separated by 149 nucleotidesShewana3_1751 and clpS are separated by 193 nucleotidesclpS and Shewana3_1753 are separated by 42 nucleotides Shewana3_1750: Shewana3_1750 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,063,884 to 2,066,109 _1750 Shewana3_1751: Shewana3_1751 - cold-shock DNA-binding protein family protein (RefSeq), at 2,066,259 to 2,066,465 _1751 Shewana3_1752: clpS - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 2,066,659 to 2,066,967 clpS Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277 _1753 Position (kb) 2066 2067Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2065.772 kb on - strand, within Shewana3_1750at 2065.778 kb on - strand, within Shewana3_1750at 2065.801 kb on + strand, within Shewana3_1750at 2065.892 kb on - strandat 2065.897 kb on - strandat 2065.972 kb on - strandat 2065.992 kb on + strandat 2066.102 kb on - strandat 2066.179 kb on - strandat 2066.368 kb on + strand, within Shewana3_1751at 2066.376 kb on - strand, within Shewana3_1751at 2066.522 kb on - strandat 2066.548 kb on - strandat 2066.946 kb on + strandat 2066.981 kb on + strandat 2067.468 kb on - strand, within Shewana3_1753at 2067.615 kb on - strand, within Shewana3_1753

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,065,772 - Shewana3_1750 0.85 -0.8
2,065,778 - Shewana3_1750 0.85 -1.5
2,065,801 + Shewana3_1750 0.86 -4.7
2,065,892 - -2.2
2,065,897 - -2.5
2,065,972 - -3.8
2,065,992 + -1.1
2,066,102 - -4.8
2,066,179 - +1.1
2,066,368 + Shewana3_1751 0.53 -6.3
2,066,376 - Shewana3_1751 0.57 -4.7
2,066,522 - -2.4
2,066,548 - -5.5
2,066,946 + -3.0
2,066,981 + -0.8
2,067,468 - Shewana3_1753 0.20 -1.7
2,067,615 - Shewana3_1753 0.27 -2.6

Or see this region's nucleotide sequence