Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0074 and Shewana3_R0075 are separated by 33 nucleotides Shewana3_R0075 and Shewana3_R0076 are separated by 62 nucleotides Shewana3_R0076 and rlmL are separated by 257 nucleotides rlmL and Shewana3_1602 overlap by 8 nucleotides Shewana3_1602 and Shewana3_1603 are separated by 1 nucleotides
Shewana3_R0074: Shewana3_R0074 - tRNA-Met (RefSeq), at 1,878,016 to 1,878,092
_R0074
Shewana3_R0075: Shewana3_R0075 - tRNA-Met (RefSeq), at 1,878,126 to 1,878,202
_R0075
Shewana3_R0076: Shewana3_R0076 - tRNA-Met (RefSeq), at 1,878,265 to 1,878,341
_R0076
Shewana3_1601: rlmL - 23S rRNA m(2)G2445 methyltransferase (RefSeq), at 1,878,599 to 1,880,740
rlmL
Shewana3_1602: Shewana3_1602 - glutaredoxin 2 (RefSeq), at 1,880,733 to 1,880,972
_1602
Shewana3_1603: Shewana3_1603 - ABC transporter ATPase component (RefSeq), at 1,880,974 to 1,882,896
_1603
Position (kb) 1878
1879
1880
1881 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1877.809 kb on - strand at 1878.481 kb on + strand at 1878.489 kb on - strand at 1878.566 kb on - strand at 1878.573 kb on + strand at 1878.621 kb on + strand at 1878.638 kb on - strand at 1878.679 kb on + strand at 1878.735 kb on + strand at 1878.735 kb on + strand at 1878.735 kb on + strand at 1878.740 kb on + strand at 1878.743 kb on - strand at 1878.743 kb on - strand at 1878.743 kb on - strand at 1878.797 kb on - strand at 1879.327 kb on + strand, within rlmL at 1879.512 kb on + strand, within rlmL at 1879.725 kb on - strand, within rlmL at 1879.748 kb on - strand, within rlmL at 1879.773 kb on + strand, within rlmL at 1879.973 kb on - strand, within rlmL at 1880.107 kb on + strand, within rlmL at 1880.107 kb on + strand, within rlmL at 1880.107 kb on + strand, within rlmL at 1880.120 kb on - strand, within rlmL at 1880.163 kb on - strand, within rlmL at 1880.279 kb on + strand, within rlmL at 1880.298 kb on + strand, within rlmL at 1880.298 kb on + strand, within rlmL at 1880.298 kb on + strand, within rlmL at 1880.448 kb on - strand, within rlmL at 1880.448 kb on - strand, within rlmL at 1880.861 kb on + strand, within Shewana3_1602 at 1880.869 kb on - strand, within Shewana3_1602 at 1880.932 kb on + strand, within Shewana3_1602 at 1881.014 kb on + strand at 1881.014 kb on + strand at 1881.071 kb on + strand at 1881.241 kb on + strand, within Shewana3_1603 at 1881.285 kb on + strand, within Shewana3_1603 at 1881.308 kb on + strand, within Shewana3_1603 at 1881.359 kb on + strand, within Shewana3_1603 at 1881.466 kb on - strand, within Shewana3_1603 at 1881.468 kb on + strand, within Shewana3_1603 at 1881.476 kb on - strand, within Shewana3_1603 at 1881.589 kb on - strand, within Shewana3_1603 at 1881.708 kb on - strand, within Shewana3_1603
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,877,809 - -1.0 1,878,481 + +0.0 1,878,489 - +0.8 1,878,566 - +0.7 1,878,573 + -0.1 1,878,621 + -3.3 1,878,638 - -2.0 1,878,679 + -0.2 1,878,735 + -3.3 1,878,735 + -3.5 1,878,735 + -0.8 1,878,740 + +0.9 1,878,743 - -1.2 1,878,743 - -0.4 1,878,743 - -0.8 1,878,797 - -1.1 1,879,327 + rlmL Shewana3_1601 0.34 -1.1 1,879,512 + rlmL Shewana3_1601 0.43 -0.5 1,879,725 - rlmL Shewana3_1601 0.53 -0.3 1,879,748 - rlmL Shewana3_1601 0.54 -1.9 1,879,773 + rlmL Shewana3_1601 0.55 -1.0 1,879,973 - rlmL Shewana3_1601 0.64 -2.3 1,880,107 + rlmL Shewana3_1601 0.70 -0.3 1,880,107 + rlmL Shewana3_1601 0.70 -0.4 1,880,107 + rlmL Shewana3_1601 0.70 +0.4 1,880,120 - rlmL Shewana3_1601 0.71 -2.6 1,880,163 - rlmL Shewana3_1601 0.73 +0.3 1,880,279 + rlmL Shewana3_1601 0.78 -0.1 1,880,298 + rlmL Shewana3_1601 0.79 -1.4 1,880,298 + rlmL Shewana3_1601 0.79 -2.5 1,880,298 + rlmL Shewana3_1601 0.79 +1.1 1,880,448 - rlmL Shewana3_1601 0.86 -5.2 1,880,448 - rlmL Shewana3_1601 0.86 -1.5 1,880,861 + Shewana3_1602 0.53 -0.9 1,880,869 - Shewana3_1602 0.57 -2.0 1,880,932 + Shewana3_1602 0.83 +1.0 1,881,014 + -1.1 1,881,014 + +0.6 1,881,071 + -0.4 1,881,241 + Shewana3_1603 0.14 -0.8 1,881,285 + Shewana3_1603 0.16 +0.7 1,881,308 + Shewana3_1603 0.17 -0.3 1,881,359 + Shewana3_1603 0.20 +0.9 1,881,466 - Shewana3_1603 0.26 -0.0 1,881,468 + Shewana3_1603 0.26 +0.7 1,881,476 - Shewana3_1603 0.26 +0.6 1,881,589 - Shewana3_1603 0.32 +1.4 1,881,708 - Shewana3_1603 0.38 -0.4
Or see this region's nucleotide sequence