Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1595 and Shewana3_1596 are separated by 231 nucleotides Shewana3_1596 and Shewana3_1597 are separated by 58 nucleotides Shewana3_1597 and Shewana3_1598 are separated by 10 nucleotides Shewana3_1598 and Shewana3_1599 overlap by 1 nucleotides
Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243
_1595
Shewana3_1596: Shewana3_1596 - hypothetical protein (RefSeq), at 1,874,475 to 1,874,903
_1596
Shewana3_1597: Shewana3_1597 - hypothetical protein (RefSeq), at 1,874,962 to 1,875,858
_1597
Shewana3_1598: Shewana3_1598 - hypothetical protein (RefSeq), at 1,875,869 to 1,876,627
_1598
Shewana3_1599: Shewana3_1599 - hypothetical protein (RefSeq), at 1,876,627 to 1,877,166
_1599
Position (kb) 1874
1875
1876 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1874.148 kb on - strand at 1874.462 kb on - strand at 1874.486 kb on + strand at 1874.487 kb on + strand at 1874.496 kb on - strand at 1875.573 kb on - strand, within Shewana3_1597 at 1875.827 kb on - strand at 1875.827 kb on - strand at 1875.827 kb on - strand at 1876.370 kb on + strand, within Shewana3_1598 at 1876.671 kb on - strand at 1876.742 kb on + strand, within Shewana3_1599 at 1876.745 kb on - strand, within Shewana3_1599
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,874,148 - +0.7 1,874,462 - -1.4 1,874,486 + -0.6 1,874,487 + -0.1 1,874,496 - -1.1 1,875,573 - Shewana3_1597 0.68 -4.2 1,875,827 - -2.2 1,875,827 - -2.2 1,875,827 - -2.1 1,876,370 + Shewana3_1598 0.66 -0.4 1,876,671 - -1.5 1,876,742 + Shewana3_1599 0.21 -1.0 1,876,745 - Shewana3_1599 0.22 -2.4
Or see this region's nucleotide sequence