Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1592 and Shewana3_1593 overlap by 8 nucleotides Shewana3_1593 and Shewana3_1594 overlap by 1 nucleotides Shewana3_1594 and Shewana3_1595 are separated by 239 nucleotides
Shewana3_1592: Shewana3_1592 - hypothetical protein (RefSeq), at 1,868,461 to 1,869,525
_1592
Shewana3_1593: Shewana3_1593 - hypothetical protein (RefSeq), at 1,869,518 to 1,870,642
_1593
Shewana3_1594: Shewana3_1594 - hypothetical protein (RefSeq), at 1,870,642 to 1,871,157
_1594
Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243
_1595
Position (kb)
1869
1870
1871 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1868.626 kb on - strand, within Shewana3_1592 at 1868.699 kb on - strand, within Shewana3_1592 at 1868.833 kb on - strand, within Shewana3_1592 at 1869.010 kb on + strand, within Shewana3_1592 at 1869.218 kb on + strand, within Shewana3_1592 at 1869.427 kb on + strand at 1869.435 kb on - strand at 1869.435 kb on - strand at 1869.437 kb on - strand at 1869.439 kb on + strand at 1869.558 kb on + strand at 1869.620 kb on - strand at 1869.673 kb on + strand, within Shewana3_1593 at 1869.785 kb on - strand, within Shewana3_1593 at 1870.106 kb on - strand, within Shewana3_1593 at 1870.224 kb on - strand, within Shewana3_1593 at 1870.379 kb on - strand, within Shewana3_1593 at 1870.389 kb on - strand, within Shewana3_1593 at 1870.717 kb on + strand, within Shewana3_1594 at 1870.837 kb on + strand, within Shewana3_1594 at 1870.837 kb on + strand, within Shewana3_1594 at 1870.845 kb on - strand, within Shewana3_1594 at 1871.167 kb on - strand at 1871.172 kb on - strand at 1871.206 kb on - strand at 1871.487 kb on + strand at 1871.548 kb on + strand at 1871.550 kb on - strand at 1871.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,868,626 - Shewana3_1592 0.15 -0.0 1,868,699 - Shewana3_1592 0.22 +1.5 1,868,833 - Shewana3_1592 0.35 +0.1 1,869,010 + Shewana3_1592 0.52 -0.4 1,869,218 + Shewana3_1592 0.71 -1.5 1,869,427 + -0.1 1,869,435 - -0.1 1,869,435 - +0.6 1,869,437 - +0.9 1,869,439 + +0.6 1,869,558 + +0.3 1,869,620 - +0.9 1,869,673 + Shewana3_1593 0.14 +0.0 1,869,785 - Shewana3_1593 0.24 -0.4 1,870,106 - Shewana3_1593 0.52 +2.2 1,870,224 - Shewana3_1593 0.63 +0.1 1,870,379 - Shewana3_1593 0.77 +1.4 1,870,389 - Shewana3_1593 0.77 -1.6 1,870,717 + Shewana3_1594 0.15 +0.9 1,870,837 + Shewana3_1594 0.38 +0.3 1,870,837 + Shewana3_1594 0.38 -2.4 1,870,845 - Shewana3_1594 0.39 -1.5 1,871,167 - +1.0 1,871,172 - -2.0 1,871,206 - +0.9 1,871,487 + +0.5 1,871,548 + -0.6 1,871,550 - +1.7 1,871,615 + -0.1
Or see this region's nucleotide sequence